Browse
Submit Data
Databases
API
Help

Dataset Information

21 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

A new subspecies of Stellariaalsine (Caryophyllaceae) from Yakushima, Japan.

ABSTRACT: An unknown taxon of Stellaria was discovered in Yakushima, a Japanese island known to harbor several endemic species. To determine the identity of this taxon, this study employed MIG-seq for the reconstruction of a finely resolved phylogenetic tree of the newly discovered taxon, along with some related species of Stellaria. The results showed that the newly discovered taxon is a relative of S.alsine. Based on this result, Stellariaalsinesubsp.nanasubsp. nov. was published.

SUBMITTER: Yahara T

PROVIDER: S-EPMC8738627 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

Molecular phylogeny and taxonomy of the <i>Hydrangeaserrata</i> complex (Hydrangeaceae) in western Japan, including a new subspecies of <i>H.acuminata</i> from Yakushima.

Project description:According to the contemporary classification of Hydrangea native to Japan, H.serrata is a polymorphic species including six varieties. We discovered a plant identified as H.serrata, but morphologically distinct from previously known varieties, in Yakushima island where approximately 50 endemic species are known. To determine the relationship of this plant with previously known varieties, we examined morphology and constructed a highly resolved phylogeny of H.serrata and its relatives using three chloroplast genomic regions, rbcL, trnL intron, psbA-trnH, and two nuclear genomic regions, ITS1 and ITS2, and Multiplex ISSR genotyping by sequencing (MIG-seq). Based on these morphological and phylogenetic observations, we describe Hydrangeaacuminatasubsp.yakushimensissubsp. nov. as a newly discovered lineage in Yakushima, Japan and propose Hydrangeaminamitanii stat. nov. and Hydrangeaacuminatasubsp.australisstat. nov. which were previously treated as varieties of H.serrata.

| S-EPMC8770417 | biostudies-literature

A new sexannulate species of Orobdella (Hirudinida, Arhynchobdellida, Orobdellidae) from Yakushima Island, Japan.

Project description:A new sexannulate species of the genus Orobdella Oka, 1895, Orobdella mononokesp. n., is described on the basis of five specimens collected from Yakushima Island, Japan. Orobdella mononokesp. n. differs from other sexannulate Orobdella species in its possessing the following combination of characters: dorsal surface bicolor in life, I-XIII, XXVII and caudal sucker grayish purple, XIV-XXVI amber, male gonopore at XI c11/c12, female gonopore at XIII b2, 8 + 1/2 between gonopores, tubular but bulbous at junction with crop gastroporal duct, epididymides in XV-XIX, and atrial cornua ovate. Phylogenetic analyses using nuclear 18S rDNA and histone H3, and mitochondrial COI, tRNA(Cys), tRNA(Met), 12S rDNA, tRNA(Val) and 16S rDNA markers show that Orobdella mononokesp. n. is closely related to Orobdella esulcata Nakano, 2010 from Kyushu, Japan, and two species, Orobdella dolichopharynx Nakano, 2011 and Orobdella shimadae Nakano, 2011, from the Ryukyu Archipelago, Japan.

| S-EPMC3332023 | biostudies-literature

Lecanorchis tabugawaensis (Orchidaceae, Vanilloideae), a new mycoheterotrophic plant from Yakushima Island, Japan.

Project description:A new species, Lecanorchis tabugawaensis Suetsugu & Fukunaga, sp. nov. from Yakushima Island, Kagoshima Prefecture, Japan, is described and illustrated. Lecanorchis tabugawaensis is similar to Lecanorchis taiwaniana, but it is easily distinguished by the straight column, the glabrous status of the base of the column, the almost entire and narrow labellum morphology, the shorter part of the column fused with the labellum and the glabrous status of the apical part of the adaxial labellum surface. The new species appears to be restricted to two locations, each consisting of only dozens of mature individuals, and is assessed as Critically Endangered [CR D1] according to IUCN Red List Categories and Criteria.

| S-EPMC5109904 | biostudies-other

New combinations in Odontostemma (Caryophyllaceae).

Project description:Sixty-three new combinations in Odontostemma (Alsineae, Caryophyllaceae) are made to accommodate placement of all currently recognized taxa of Arenaria subg. Odontostemma within the genus Odontostemma.

| S-EPMC4956930 | biostudies-literature

Dianthusaticii, a new species from Turkey (Caryophyllaceae).

Project description:During the taxonomic revision of the Turkish Dianthus species, specimens collected from Bilecik, Seben (Bolu), and Nall?han (Ankara) were discovered that represent a new species. Its description, images, chorology, ecology, and threat category are provided. It was compared with a closely related species, Dianthuszonatus, and differences are based on its general morphology and seed micromorphology.

| S-EPMC4408729 | biostudies-literature

Bolanthusturcicus (Caryophyllaceae), a new species from Turkey.

Project description:A new species Bolanthusturcicus Koç & Hamzaoğlu, sp. nov. was discovered on Hasan Mountain (Turkey, Aksaray province) where it grows on volcanic stony slopes and alpine steppe. its description, images, chorology and ecology, and threat category are provided in this article. It was compared with a closely related species, Bolanthusminuartioides (Jaub. & Spach) Hub.-Mor., Bolanthushuber-morathii C.Simon, Bolanthusspergulifolius (Jaub. & Spach) Hub.-Mor., Bolanthusfrankenioides (Boiss) Bark., Bolanthusmevlanae Aytaç based on its general morphology and seed micromorphology.

| S-EPMC4549884 | biostudies-literature

Caryophyllaceae

Project description:Caryophyllaceae overview

| PRJNA186980 | ENA

Caryophyllaceae

Project description:Caryophyllaceae Transcriptome or Gene expression

| PRJNA53945 | ENA

Eremogone (Caryophyllaceae): new combinations for Old World species.

Project description:Twenty-one new combinations in Eremogone (Eremogoneae, Caryophyllaceae) are proposed to accommodate placement of all Old World taxa of Arenariasubg.Eremogone and Eremogoneastrum within Eremogone.

| S-EPMC4489083 | biostudies-literature

Sedum formosanum subsp. miyakojimense (Crassulaceae), a new subspecies from Miyako-jima Island of the Ryukyu Islands, Japan.

Project description:We re-examined the taxonomic status of plants treated as Sedum formosanum (Crassulaceae) from Miyako-jima Island of the Ryukyu Islands, Japan, using morphological comparison and molecular phylogenetic analyses with related species. In morphology, plants from Miyako-jima Island bore a close resemblance to the other plants of S. formosanum, but differed in being perennial, polycarpic, and having lateral axillary branches. Molecular analyses based on ITS of nrDNA and six regions of cpDNA sequencing indicated that the Miyako-jima plants formed a distinct subclade. This subclade was part of a polytomy with three other subclades comprising nine taxa endemic to Taiwan and S. formosanum from other areas, including the type locality. Therefore, we propose and describe the Miyako-jima plants as a new subspecies, Sedum formosanum subsp. miyakojimense.

| S-EPMC7266832 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data