New Trends in Melanoma Detection Using Neural Networks: A Systematic Review.
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ABSTRACT:
SUBMITTER: Popescu D
PROVIDER: S-EPMC8778535 | biostudies-literature |
REPOSITORIES: biostudies-literature
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Project description:Facial emotion recognition (FER) is a computer vision process aimed at detecting and classifying human emotional expressions. FER systems are currently used in a vast range of applications from areas such as education, healthcare, or public safety; therefore, detection and recognition accuracies are very important. Similar to any computer vision task based on image analyses, FER solutions are also suitable for integration with artificial intelligence solutions represented by different neural network varieties, especially deep neural networks that have shown great potential in the last years due to their feature extraction capabilities and computational efficiency over large datasets. In this context, this paper reviews the latest developments in the FER area, with a focus on recent neural network models that implement specific facial image analysis algorithms to detect and recognize facial emotions. This paper's scope is to present from historical and conceptual perspectives the evolution of the neural network architectures that proved significant results in the FER area. This paper endorses convolutional neural network (CNN)-based architectures against other neural network architectures, such as recurrent neural networks or generative adversarial networks, highlighting the key elements and performance of each architecture, and the advantages and limitations of the proposed models in the analyzed papers. Additionally, this paper presents the available datasets that are currently used for emotion recognition from facial expressions and micro-expressions. The usage of FER systems is also highlighted in various domains such as healthcare, education, security, or social IoT. Finally, open issues and future possible developments in the FER area are identified.
| S-EPMC10458371 | biostudies-literature
Project description:BackgroundRecent years have been witnessing a substantial improvement in the accuracy of skin cancer classification using convolutional neural networks (CNNs). CNNs perform on par with or better than dermatologists with respect to the classification tasks of single images. However, in clinical practice, dermatologists also use other patient data beyond the visual aspects present in a digitized image, further increasing their diagnostic accuracy. Several pilot studies have recently investigated the effects of integrating different subtypes of patient data into CNN-based skin cancer classifiers.ObjectiveThis systematic review focuses on the current research investigating the impact of merging information from image features and patient data on the performance of CNN-based skin cancer image classification. This study aims to explore the potential in this field of research by evaluating the types of patient data used, the ways in which the nonimage data are encoded and merged with the image features, and the impact of the integration on the classifier performance.MethodsGoogle Scholar, PubMed, MEDLINE, and ScienceDirect were screened for peer-reviewed studies published in English that dealt with the integration of patient data within a CNN-based skin cancer classification. The search terms skin cancer classification, convolutional neural network(s), deep learning, lesions, melanoma, metadata, clinical information, and patient data were combined.ResultsA total of 11 publications fulfilled the inclusion criteria. All of them reported an overall improvement in different skin lesion classification tasks with patient data integration. The most commonly used patient data were age, sex, and lesion location. The patient data were mostly one-hot encoded. There were differences in the complexity that the encoded patient data were processed with regarding deep learning methods before and after fusing them with the image features for a combined classifier.ConclusionsThis study indicates the potential benefits of integrating patient data into CNN-based diagnostic algorithms. However, how exactly the individual patient data enhance classification performance, especially in the case of multiclass classification problems, is still unclear. Moreover, a substantial fraction of patient data used by dermatologists remains to be analyzed in the context of CNN-based skin cancer classification. Further exploratory analyses in this promising field may optimize patient data integration into CNN-based skin cancer diagnostics for patients' benefits.
| S-EPMC8285747 | biostudies-literature
Project description:Prostate cancer is one of the most common forms of cancer and the third leading cause of cancer death in North America. As an integrated part of computer-aided detection (CAD) tools, diffusion-weighted magnetic resonance imaging (DWI) has been intensively studied for accurate detection of prostate cancer. With deep convolutional neural networks (CNNs) significant success in computer vision tasks such as object detection and segmentation, different CNN architectures are increasingly investigated in medical imaging research community as promising solutions for designing more accurate CAD tools for cancer detection. In this work, we developed and implemented an automated CNN-based pipeline for detection of clinically significant prostate cancer (PCa) for a given axial DWI image and for each patient. DWI images of 427 patients were used as the dataset, which contained 175 patients with PCa and 252 patients without PCa. To measure the performance of the proposed pipeline, a test set of 108 (out of 427) patients were set aside and not used in the training phase. The proposed pipeline achieved area under the receiver operating characteristic curve (AUC) of 0.87 (95[Formula: see text] Confidence Interval (CI): 0.84-0.90) and 0.84 (95[Formula: see text] CI: 0.76-0.91) at slice level and patient level, respectively.
| S-EPMC6925141 | biostudies-literature
Project description:Background:Field phenotyping by remote sensing has received increased interest in recent years with the possibility of achieving high-throughput analysis of crop fields. Along with the various technological developments, the application of machine learning methods for image analysis has enhanced the potential for quantitative assessment of a multitude of crop traits. For wheat breeding purposes, assessing the production of wheat spikes, as the grain-bearing organ, is a useful proxy measure of grain production. Thus, being able to detect and characterize spikes from images of wheat fields is an essential component in a wheat breeding pipeline for the selection of high yielding varieties. Results:We have applied a deep learning approach to accurately detect, count and analyze wheat spikes for yield estimation. We have tested the approach on a set of images of wheat field trial comprising 10 varieties subjected to three fertilizer treatments. The images have been captured over one season, using high definition RGB cameras mounted on a land-based imaging platform, and viewing the wheat plots from an oblique angle. A subset of in-field images has been accurately labeled by manually annotating all the spike regions. This annotated dataset, called SPIKE, is then used to train four region-based Convolutional Neural Networks (R-CNN) which take, as input, images of wheat plots, and accurately detect and count spike regions in each plot. The CNNs also output the spike density and a classification probability for each plot. Using the same R-CNN architecture, four different models were generated based on four different datasets of training and testing images captured at various growth stages. Despite the challenging field imaging conditions, e.g., variable illumination conditions, high spike occlusion, and complex background, the four R-CNN models achieve an average detection accuracy ranging from 88 to 94% across different sets of test images. The most robust R-CNN model, which achieved the highest accuracy, is then selected to study the variation in spike production over 10 wheat varieties and three treatments. The SPIKE dataset and the trained CNN are the main contributions of this paper. Conclusion:With the availability of good training datasets such us the SPIKE dataset proposed in this article, deep learning techniques can achieve high accuracy in detecting and counting spikes from complex wheat field images. The proposed robust R-CNN model, which has been trained on spike images captured during different growth stages, is optimized for application to a wider variety of field scenarios. It accurately quantifies the differences in yield produced by the 10 varieties we have studied, and their respective responses to fertilizer treatment. We have also observed that the other R-CNN models exhibit more specialized performances. The data set and the R-CNN model, which we make publicly available, have the potential to greatly benefit plant breeders by facilitating the high throughput selection of high yielding varieties.
| S-EPMC6236889 | biostudies-other
Project description:Unobtrusive and accurate ambulatory methods are needed to monitor long-term sleep patterns for improving health. Previously developed ambulatory sleep detection methods rely either in whole or in part on self-reported diary data as ground truth, which is a problem, since people often do not fill them out accurately. This paper presents an algorithm that uses multimodal data from smartphones and wearable technologies to detect sleep/wake state and sleep onset/offset using a type of recurrent neural network with long-short-term memory (LSTM) cells for synthesizing temporal information. We collected 5580 days of multimodal data from 186 participants and compared the new method for sleep/wake classification and sleep onset/offset detection to, first, nontemporal machine learning methods and, second, a state-of-the-art actigraphy software. The new LSTM method achieved a sleep/wake classification accuracy of 96.5%, and sleep onset/offset detection F1 scores of 0.86 and 0.84, respectively, with mean absolute errors of 5.0 and 5.5 min, res-pectively, when compared with sleep/wake state and sleep onset/offset assessed using actigraphy and sleep diaries. The LSTM results were statistically superior to those from nontemporal machine learning algorithms and the actigraphy software. We show good generalization of the new algorithm by comparing participant-dependent and participant-independent models, and we show how to make the model nearly realtime with slightly reduced performance.
| S-EPMC6837840 | biostudies-literature
Project description:In the Information and Communication Technology age, connected objects generate massive amounts of data traffic, which enables data analysis to uncover previously hidden trends and detect unusual network-load. We identify five core design principles to consider when designing a deep learning-empowered intrusion detection system (IDS). We proposed the Temporal Convolution Neural Network (TCNN), an intelligent model for IoT-IDS that aggregates convolution neural network (CNN) and generic convolution, based on these concepts. To handle unbalanced datasets, TCNN is accumulated with synthetic minority oversampling technique with nominal continuity. It is also used in conjunction with effective feature engineering techniques like attribute transformation and reduction. The presented model is compared to two traditional machine learning algorithms, random forest (RF) and logistic regression (LR), as well as LSTM and CNN deep learning techniques, using the Bot-IoT data repository. The outcomes of the experiments depicts that TCNN maintains a strong balance of efficacy and performance. It is better as compared to other deep learning IDSs, with a multi-class traffic detection accuracy of 99.9986 percent and a training period that is very close to CNN.
| S-EPMC8507481 | biostudies-literature
Project description:Background Accurate detection of arrhythmic events in the intensive care units (ICU) is of paramount significance in providing timely care. However, traditional ICU monitors generate a high rate of false alarms causing alarm fatigue. In this work, we develop an algorithm to improve life threatening arrhythmia detection in the ICUs using a deep learning approach. Methods and Results This study involves a total of 953 independent life-threatening arrhythmia alarms generated from the ICU bedside monitors of 410 patients. Specifically, we used the ECG (4 channels), arterial blood pressure, and photoplethysmograph signals to accurately detect the onset and offset of various arrhythmias, without prior knowledge of the alarm type. We used a hybrid convolutional neural network based classifier that fuses traditional handcrafted features with features automatically learned using convolutional neural networks. Further, the proposed architecture remains flexible to be adapted to various arrhythmic conditions as well as multiple physiological signals. Our hybrid- convolutional neural network approach achieved superior performance compared with methods which only used convolutional neural network. We evaluated our algorithm using 5-fold cross-validation for 5 times and obtained an accuracy of 87.5%±0.5%, and a score of 81%±0.9%. Independent evaluation of our algorithm on the publicly available PhysioNet 2015 Challenge database resulted in overall classification accuracy and score of 93.9% and 84.3%, respectively, indicating its efficacy and generalizability. Conclusions Our method accurately detects multiple arrhythmic conditions. Suitable translation of our algorithm may significantly improve the quality of care in ICUs by reducing the burden of false alarms.
| S-EPMC9075394 | biostudies-literature
Project description:BackgroundGlaucoma leads to irreversible blindness. Globally, it is the second most common retinal disease that leads to blindness, slightly less common than cataracts. Therefore, there is a great need to avoid the silent growth of this disease using recently developed generative adversarial networks (GANs).ObjectiveThis paper aims to introduce a GAN technology for the diagnosis of eye disorders, particularly glaucoma. This paper illustrates deep adversarial learning as a potential diagnostic tool and the challenges involved in its implementation. This study describes and analyzes many of the pitfalls and problems that researchers will need to overcome to implement this kind of technology.MethodsTo organize this review comprehensively, articles and reviews were collected using the following keywords: ("Glaucoma," "optic disc," "blood vessels") and ("receptive field," "loss function," "GAN," "Generative Adversarial Network," "Deep learning," "CNN," "convolutional neural network" OR encoder). The records were identified from 5 highly reputed databases: IEEE Xplore, Web of Science, Scopus, ScienceDirect, and PubMed. These libraries broadly cover the technical and medical literature. Publications within the last 5 years, specifically 2015-2020, were included because the target GAN technique was invented only in 2014 and the publishing date of the collected papers was not earlier than 2016. Duplicate records were removed, and irrelevant titles and abstracts were excluded. In addition, we excluded papers that used optical coherence tomography and visual field images, except for those with 2D images. A large-scale systematic analysis was performed, and then a summarized taxonomy was generated. Furthermore, the results of the collected articles were summarized and a visual representation of the results was presented on a T-shaped matrix diagram. This study was conducted between March 2020 and November 2020.ResultsWe found 59 articles after conducting a comprehensive survey of the literature. Among the 59 articles, 30 present actual attempts to synthesize images and provide accurate segmentation/classification using single/multiple landmarks or share certain experiences. The other 29 articles discuss the recent advances in GANs, do practical experiments, and contain analytical studies of retinal disease.ConclusionsRecent deep learning techniques, namely GANs, have shown encouraging performance in retinal disease detection. Although this methodology involves an extensive computing budget and optimization process, it saturates the greedy nature of deep learning techniques by synthesizing images and solves major medical issues. This paper contributes to this research field by offering a thorough analysis of existing works, highlighting current limitations, and suggesting alternatives to support other researchers and participants in further improving and strengthening future work. Finally, new directions for this research have been identified.
| S-EPMC8493455 | biostudies-literature
Project description:High-speed videoendoscopy is a major tool for quantitative laryngology. Glottis segmentation and glottal midline detection are crucial for computing vocal fold-specific, quantitative parameters. However, fully automated solutions show limited clinical applicability. Especially unbiased glottal midline detection remains a challenging problem. We developed a multitask deep neural network for glottis segmentation and glottal midline detection. We used techniques from pose estimation to estimate the anterior and posterior points in endoscopy images. Neural networks were set up in TensorFlow/Keras and trained and evaluated with the BAGLS dataset. We found that a dual decoder deep neural network termed GlottisNetV2 outperforms the previously proposed GlottisNet in terms of MAPE on the test dataset (1.85% to 6.3%) while converging faster. Using various hyperparameter tunings, we allow fast and directed training. Using temporal variant data on an additional data set designed for this task, we can improve the median prediction accuracy from 2.1% to 1.76% when using 12 consecutive frames and additional temporal filtering. We found that temporal glottal midline detection using a dual decoder architecture together with keypoint estimation allows accurate midline prediction. We show that our proposed architecture allows stable and reliable glottal midline predictions ready for clinical use and analysis of symmetry measures.
| S-EPMC9933989 | biostudies-literature
Project description:System security for web-based applications is paramount, and for the avoidance of possible cyberattacks it is important to detect vulnerable JavaScript functions. Developers and security analysts have long relied upon static analysis to investigate vulnerabilities and faults within programs. Static analysis tools are used for analyzing a program's source code and identifying sections of code that need to be further examined by a human analyst. This article suggests a new approach for identifying vulnerable code in JavaScript programs by using ensemble of convolutional neural networks (CNNs) models. These models use vulnerable information and code features to detect related vulnerable code. For identifying different vulnerabilities in JavaScript functions, an approach has been tested which involves the stacking of CNNs with misbalancing, random under sampler, and random over sampler. Our approach uses these CNNs to detect vulnerable code and improve upon current techniques' limitations. Previous research has introduced several approaches to identify vulnerable code in JavaScript programs, but often have their own limitations such as low accuracy rates and high false-positive or false-negative results. Our approach addresses this by using the power of convolutional neural networks and is proven to be highly effective in the detection of vulnerable functions that could be used by cybercriminals. The stacked CNN approach has an approximately 98% accuracy, proving its robustness and usability in real-world scenarios. To evaluate its efficacy, the proposed method is trained using publicly available JavaScript blocks, and the results are assessed using various performance metrics. The research offers a valuable insight into better ways to protect web-based applications and systems from potential threats, leading to a safer online environment for all.
| S-EPMC10909211 | biostudies-literature