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Phylogenomic and mitogenomic data can accelerate inventorying of tropical beetles during the current biodiversity crisis.

ABSTRACT: Conservation efforts must be evidence-based, so rapid and economically feasible methods should be used to quantify diversity and distribution patterns. We have attempted to overcome current impediments to the gathering of biodiversity data by using integrative phylogenomic and three mtDNA fragment analyses. As a model, we sequenced the Metriorrhynchini beetle fauna, sampled from ~700 localities in three continents. The species-rich dataset included ~6500 terminals, ~ 1850 putative species delimited at 5% uncorrected pairwise threshold, possibly ~1000 of them unknown to science. Neither type of data could alone answer our questions on biodiversity and phylogeny. The phylogenomic backbone enabled the integrative delimitation of robustly defined natural genus-group units that will inform future research. Using constrained mtDNA analysis, we identified the spatial structure of species diversity, very high species-level endemism, and a biodiversity hotspot in New Guinea. We suggest that focused field research and subsequent laboratory and bioinformatic workflow steps would substantially accelerate the inventorying of any hyperdiverse tropical group with several thousand species. The outcome would be a scaffold for the incorporation of further data from environmental sequencing and ecological studies. The database of sequences could set a benchmark for the spatiotemporal evaluation of biodiversity, would support evidence-based conservation planning, and would provide a robust framework for systematic, biogeographic, and evolutionary studies.

SUBMITTER: Motyka M

PROVIDER: S-EPMC8798050 | biostudies-literature |

REPOSITORIES: biostudies-literature

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Project description:Longhorn beetles are highly diversified and important for agriculture and health of the environment. However, the fauna and ecology of these beetles are not well known in Thailand. This study is the first to report the biodiversity, elevation, and seasonal distribution of longhorn beetles. Specimens were collected by malaise traps from 41 localities in 24 national parks throughout the country during 2006-2009. The traps were operated at each site for 12 consecutive months with a monthly service. A total of 199 morphotaxa in 36 tribes of 6 subfamilies were identified from 1376 specimens. Of these, 40.7% and 14.5% of total taxa were singletons and doubletons, respectively. The Shannon diversity index and observed species richness at Panernthung, Loei Forest Unit and Mae Fang Hotspring were high at 0.96 (30), 0.88 (50), and 0.86 (34), respectively. Local richness ranged between 3 and 50 species, while the species richness estimator showed between 6 and 1275 species. The most relatively abundant species, Nupserha lenita, Pterolophia sp.1, Oberea sp.3, Acalolepta pseudospeciosa, and Ac. rustricatrix represented 4.80%, 4.80%, 4.80%, 4.5%, and 4.43% of the species, respectively. The species with the widest distribution range of percentage of species occurrence (% SO) was Pt. sp.1 (63.4%), followed by Ac. rustricatrix (39%) and Moechotypa suffusa (39%). In a significantly negative relationship between species richness and elevation (p > 0.05, R2 = 0.04), the species richness pattern showed a hump-shaped curve that peaked at the middle elevation (501-1000 m asl). Regarding seasonal variation, most of the species occurred during the hot season (March-April) and peaked in early rainy season (May), while a low number of species were found during the mid-rainy (June-October) and cold season (November-February). Ordination analysis indicated that the distribution of most species was associated with regions and forest type, and most of the species correlated with forest located at middle and low elevation. The results of this study indicated the very high biodiversity of longhorn beetles in Thailand, which suggests that an understanding of their seasonal and elevational distribution will be of value to agriculture management and conservation. They also indicated that malaise traps are appropriate for the evaluation of biodiversity.

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Phylogenomic and mitogenomic data can accelerate inventorying of tropical beetles during the current biodiversity crisis.

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