Unknown

Dataset Information

0

MetAMDB: Metabolic Atom Mapping Database.


ABSTRACT: MetAMDB is an open-source metabolic atom mapping database, providing atom mappings for around 43,000 metabolic reactions. Each atom mapping can be inspected and downloaded either as an RXN file or as a graphic in SVG format. In addition, MetAMDB offers the possibility of automatically creating atom mapping models based on user-specified metabolic networks. These models can be of any size (small to genome-scale) and can subsequently be used in standard 13C metabolic flux analysis software.

SUBMITTER: Starke C 

PROVIDER: S-EPMC8878866 | biostudies-literature | 2022 Jan

REPOSITORIES: biostudies-literature

altmetric image

Publications

MetAMDB: Metabolic Atom Mapping Database.

Starke Collin C   Wegner Andre A  

Metabolites 20220127 2


MetAMDB is an open-source metabolic atom mapping database, providing atom mappings for around 43,000 metabolic reactions. Each atom mapping can be inspected and downloaded either as an RXN file or as a graphic in SVG format. In addition, MetAMDB offers the possibility of automatically creating atom mapping models based on user-specified metabolic networks. These models can be of any size (small to genome-scale) and can subsequently be used in standard 13C metabolic flux analysis software. ...[more]

Similar Datasets

| S-EPMC5471289 | biostudies-literature
| S-EPMC4256833 | biostudies-other
| S-EPMC11863377 | biostudies-literature
| S-EPMC2881407 | biostudies-literature
| S-EPMC8307411 | biostudies-literature
| S-EPMC4352573 | biostudies-other
| S-EPMC1304244 | biostudies-literature
| S-EPMC3496344 | biostudies-literature
| S-EPMC7744705 | biostudies-literature
| S-EPMC4252106 | biostudies-literature