Unknown

Dataset Information

0

Just Add Data: automated predictive modeling for knowledge discovery and feature selection.


ABSTRACT: Fully automated machine learning (AutoML) for predictive modeling is becoming a reality, giving rise to a whole new field. We present the basic ideas and principles of Just Add Data Bio (JADBio), an AutoML platform applicable to the low-sample, high-dimensional omics data that arise in translational medicine and bioinformatics applications. In addition to predictive and diagnostic models ready for clinical use, JADBio focuses on knowledge discovery by performing feature selection and identifying the corresponding biosignatures, i.e., minimal-size subsets of biomarkers that are jointly predictive of the outcome or phenotype of interest. It also returns a palette of useful information for interpretation, clinical use of the models, and decision making. JADBio is qualitatively and quantitatively compared against Hyper-Parameter Optimization Machine Learning libraries. Results show that in typical omics dataset analysis, JADBio manages to identify signatures comprising of just a handful of features while maintaining competitive predictive performance and accurate out-of-sample performance estimation.

SUBMITTER: Tsamardinos I 

PROVIDER: S-EPMC9203777 | biostudies-literature | 2022 Jun

REPOSITORIES: biostudies-literature

altmetric image

Publications

Just Add Data: automated predictive modeling for knowledge discovery and feature selection.

Tsamardinos Ioannis I   Charonyktakis Paulos P   Papoutsoglou Georgios G   Borboudakis Giorgos G   Lakiotaki Kleanthi K   Zenklusen Jean Claude JC   Juhl Hartmut H   Chatzaki Ekaterini E   Lagani Vincenzo V  

NPJ precision oncology 20220616 1


Fully automated machine learning (AutoML) for predictive modeling is becoming a reality, giving rise to a whole new field. We present the basic ideas and principles of Just Add Data Bio (JADBio), an AutoML platform applicable to the low-sample, high-dimensional omics data that arise in translational medicine and bioinformatics applications. In addition to predictive and diagnostic models ready for clinical use, JADBio focuses on knowledge discovery by performing feature selection and identifying  ...[more]

Similar Datasets

| S-EPMC4937038 | biostudies-literature
| S-EPMC5445096 | biostudies-literature
| S-EPMC4986664 | biostudies-literature
| S-EPMC8361636 | biostudies-literature
| S-EPMC8165452 | biostudies-literature
| S-EPMC6532608 | biostudies-literature
| S-EPMC1181625 | biostudies-literature
| S-EPMC8386505 | biostudies-literature
| S-EPMC10769187 | biostudies-literature
| S-EPMC8386074 | biostudies-literature