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Reversal of viral and epigenetic HLA class I repression in Merkel cell carcinoma.


ABSTRACT: Cancers avoid immune surveillance through an array of mechanisms, including perturbation of HLA class I antigen presentation. Merkel cell carcinoma (MCC) is an aggressive, HLA-I-low, neuroendocrine carcinoma of the skin often caused by the Merkel cell polyomavirus (MCPyV). Through the characterization of 11 newly generated MCC patient-derived cell lines, we identified transcriptional suppression of several class I antigen presentation genes. To systematically identify regulators of HLA-I loss in MCC, we performed parallel, genome-scale, gain- and loss-of-function screens in a patient-derived MCPyV-positive cell line and identified MYCL and the non-canonical Polycomb repressive complex 1.1 (PRC1.1) as HLA-I repressors. We observed physical interaction of MYCL with the MCPyV small T viral antigen, supporting a mechanism of virally mediated HLA-I suppression. We further identify the PRC1.1 component USP7 as a pharmacologic target to restore HLA-I expression in MCC.

SUBMITTER: Lee PC 

PROVIDER: S-EPMC9246387 | biostudies-literature | 2022 Jul

REPOSITORIES: biostudies-literature

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Reversal of viral and epigenetic HLA class I repression in Merkel cell carcinoma.

Lee Patrick C PC   Klaeger Susan S   Le Phuong M PM   Korthauer Keegan K   Cheng Jingwei J   Ananthapadmanabhan Varsha V   Frost Thomas C TC   Stevens Jonathan D JD   Wong Alan Yl AY   Iorgulescu J Bryan JB   Tarren Anna Y AY   Chea Vipheaviny A VA   Carulli Isabel P IP   Lemvigh Camilla K CK   Pedersen Christina B CB   Gartin Ashley K AK   Sarkizova Siranush S   Wright Kyle T KT   Li Letitia W LW   Nomburg Jason J   Li Shuqiang S   Huang Teddy T   Liu Xiaoxi X   Pomerance Lucas L   Doherty Laura M LM   Apffel Annie M AM   Wallace Luke J LJ   Rachimi Suzanna S   Felt Kristen D KD   Wolff Jacquelyn O JO   Witten Elizabeth E   Zhang Wandi W   Neuberg Donna D   Lane William J WJ   Zhang Guanglan G   Olsen Lars R LR   Thakuria Manisha M   Rodig Scott J SJ   Clauser Karl R KR   Starrett Gabriel J GJ   Doench John G JG   Buhrlage Sara J SJ   Carr Steven A SA   DeCaprio James A JA   Wu Catherine J CJ   Keskin Derin B DB  

The Journal of clinical investigation 20220701 13


Cancers avoid immune surveillance through an array of mechanisms, including perturbation of HLA class I antigen presentation. Merkel cell carcinoma (MCC) is an aggressive, HLA-I-low, neuroendocrine carcinoma of the skin often caused by the Merkel cell polyomavirus (MCPyV). Through the characterization of 11 newly generated MCC patient-derived cell lines, we identified transcriptional suppression of several class I antigen presentation genes. To systematically identify regulators of HLA-I loss in  ...[more]

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