Dataset Information

Identifying Patients With Delirium Based on Unstructured Clinical Notes: Observational Study.

ABSTRACT:

Background

Delirium in hospitalized patients is a syndrome of acute brain dysfunction. Diagnostic (International Classification of Diseases [ICD]) codes are often used in studies using electronic health records (EHRs), but they are inaccurate.

Objective

We sought to develop a more accurate method using natural language processing (NLP) to detect delirium episodes on the basis of unstructured clinical notes.

Methods

We collected 1.5 million notes from >10,000 patients from among 9 hospitals. Seven experts iteratively labeled 200,471 sentences. Using these, we trained three NLP classifiers: Support Vector Machine, Recurrent Neural Networks, and Transformer. Testing was performed using an external data set. We also evaluated associations with delirium billing (ICD) codes, medications, orders for restraints and sitters, direct assessments (Confusion Assessment Method [CAM] scores), and in-hospital mortality. F1 scores, confusion matrices, and areas under the receiver operating characteristic curve (AUCs) were used to compare NLP models. We used the φ coefficient to measure associations with other delirium indicators.

Results

The transformer NLP performed best on the following parameters: micro F1=0.978, macro F1=0.918, positive AUC=0.984, and negative AUC=0.992. NLP detections exhibited higher correlations (φ) than ICD codes with deliriogenic medications (0.194 vs 0.073 for ICD codes), restraints and sitter orders (0.358 vs 0.177), mortality (0.216 vs 0.000), and CAM scores (0.256 vs -0.028).

Conclusions

Clinical notes are an attractive alternative to ICD codes for EHR delirium studies but require automated methods. Our NLP model detects delirium with high accuracy, similar to manual chart review. Our NLP approach can provide more accurate determination of delirium for large-scale EHR-based studies regarding delirium, quality improvement, and clinical trails.

SUBMITTER: Ge W

PROVIDER: S-EPMC9270709 | biostudies-literature | 2022 Jun

REPOSITORIES: biostudies-literature

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Publications

Identifying Patients With Delirium Based on Unstructured Clinical Notes: Observational Study.

Ge Wendong W Alabsi Haitham H Jain Aayushee A Ye Elissa E Sun Haoqi H Fernandes Marta M Magdamo Colin C Tesh Ryan A RA Collens Sarah I SI Newhouse Amy A Mvr Moura Lidia L Zafar Sahar S Hsu John J Akeju Oluwaseun O Robbins Gregory K GK Mukerji Shibani S SS Das Sudeshna S Westover M Brandon MB

JMIR formative research 20220624 6

<h4>Background</h4>Delirium in hospitalized patients is a syndrome of acute brain dysfunction. Diagnostic (International Classification of Diseases [ICD]) codes are often used in studies using electronic health records (EHRs), but they are inaccurate.<h4>Objective</h4>We sought to develop a more accurate method using natural language processing (NLP) to detect delirium episodes on the basis of unstructured clinical notes.<h4>Methods</h4>We collected 1.5 million notes from >10,000 patients from a ...[more]

PMID: 35749214

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Dataset Information

Identifying Patients With Delirium Based on Unstructured Clinical Notes: Observational Study.

Background

Objective

Methods

Results

Conclusions

Publications

Identifying Patients With Delirium Based on Unstructured Clinical Notes: Observational Study.

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