HAPPE: A Tool for Population Haplotype Analysis and Visualization in Editable Excel Tables.

ABSTRACT: Haplotype identification, characterization and visualization are important for large-scale analysis and use in population genomics. Many tools have been developed to visualize haplotypes, but it is challenging to display both the pattern of haplotypes and the genotypes for each single SNP in the context of a large amount of genomic data. Here, we describe the tool HAPPE, which uses the agglomerative hierarchical clustering algorithm to characterize and visualize the genotypes and haplotypes in a phylogenetic context. The tool displays the plots by coloring the cells and/or their borders in Excel tables for any given gene and genomic region of interest. HAPPE facilitates informative displays wherein data in plots are easy to read and access. It allows parallel display of several lines of va

SUBMITTER: Feng C 

PROVIDER: S-EPMC9284118 | biostudies-literature | 2022

REPOSITORIES: biostudies-literature