Mononucleotide A-repeats may Play a Regulatory Role in Endothermic Housekeeping Genes.
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ABSTRACT: Background
Coding and non-coding short tandem repeats (STRs) facilitate a great diversity of phenotypic traits. The imbalance of mononucleotide A-repeats around transcription start sites (TSSs) was found in 3 mammals: H. sapiens, M. musculus, and R. norvegicus.Principal findings
We found that the imbalance pattern originated in some vertebrates. A similar pattern was observed in mammals and birds, but not in amphibians and reptiles. We proposed that the enriched A-repeats upstream of TSSs is a novel hallmark of endotherms or warm-blooded animals. Gene ontology analysis indicates that the primary function of upstream A-repeats involves metabolism, cellular transportation, and sensory perception (smell and chemical stimulus) through housekeeping genes.Conclusions
Upstream A-repeats may play a regulatory role in the metabolic process of endothermic animals.
SUBMITTER: Pholtaisong J
PROVIDER: S-EPMC9290108 | biostudies-literature |
REPOSITORIES: biostudies-literature
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2018-06-23 | GSE116168 | GEO