A guide to choosing and implementing reference models for social network analysis.
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ABSTRACT:
SUBMITTER: Hobson EA
PROVIDER: S-EPMC9292850 | biostudies-literature |
REPOSITORIES: biostudies-literature
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Project description:Null models are an important component of the social network analysis toolbox. However, their use in hypothesis testing is still not widespread. Furthermore, several different approaches for constructing null models exist, each with their relative strengths and weaknesses, and often testing different hypotheses.In this study, I highlight why null models are important for robust hypothesis testing in studies of animal social networks. Using simulated data containing a known observation bias, I test how different statistical tests and null models perform if such a bias was unknown.I show that permutations of the raw observational (or 'pre-network') data consistently account for underlying structure in the generated social network, and thus can reduce both type I and type II error rates. However, permutations of pre-network data remain relatively uncommon in animal social network analysis because they are challenging to implement for certain data types, particularly those from focal follows and GPS tracking.I explain simple routines that can easily be implemented across different types of data, and supply R code that applies each type of null model to the same simulated dataset. The R code can easily be modified to test hypotheses with empirical data. Widespread use of pre-network data permutation methods will benefit researchers by facilitating robust hypothesis testing.
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Project description:IntroductionCommunity detection, the process of identifying subgroups of highly connected individuals within a network, is an aspect of social network analysis that is relevant but potentially underutilized in prevention research. Guidance on using community detection methods stresses aligning methods with specific research questions but lacks clear operationalization. The Question Alignment approach was developed to help address this gap and promote the high-quality use of community detection methods.MethodsA total of 6 community detection methods are discussed: Walktrap, Edge-Betweenness, Infomap, Louvain, Label Propagation, and Spinglass. The Question Alignment approach is described and demonstrated using real-world data collected in 2013. This hypothetical case study was conducted in 2019 and focused on targeting a hand hygiene intervention to high-risk communities to prevent influenza transmission.ResultsCommunity detection using the Walktrap method best fit the hypothetical case study. The communities derived using the Walktrap method were quite different from communities derived through the other 5 methods in both the number of communities and individuals within communities. There was evidence to support that the Question Alignment approach can help researchers produce more useful community detection results. Compared to other methods of selecting high-risk groups, the Walktrap produced the most communities that met the hypothetical intervention requirements.ConclusionsAs prevention research incorporating social networks increases, researchers can use the Question Alignment approach to produce more theoretically meaningful results and potentially more useful results for practice. Future research should focus on assessing whether the Question Alignment approach translates into improved intervention results.
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Project description:The advent of facile genome engineering technologies has made the generation of knock-in gene-expression or fusion-protein reporters more tractable. Fluorescent protein labeling of specific genes combined with surface marker profiling can more specifically identify a cell population. However, the question of which fluorescent proteins to utilize to generate reporter constructs is made difficult by the number of candidate proteins and the lack of updated experimental data on newer fluorescent proteins. Compounding this problem, most fluorescent proteins are designed and tested for use in microscopy. To address this, we cloned and characterized the detection sensitivity, spectral overlap, and spillover spreading of 13 monomeric fluorescent proteins to determine utility in multicolor panels. We identified a group of five fluorescent proteins with high signal to noise ratio, minimal spectral overlap, and low spillover spreading making them compatible for multicolor experiments. Specifically, generating reporters with combinations of three of these proteins would allow efficient measurements even at low-level expression. Because the proteins are monomeric, they could function either as gene-expression or as fusion-protein reporters. Additionally, this approach can be generalized as new fluorescent proteins are developed to determine their usefulness in multicolor panels. © 2018 International Society for Advancement of Cytometry.
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Project description:There are now several monoclonal antibody (mAb) therapies ("biologics") available to treat severe asthma. Omalizumab is an anti-IgE mAb and is licensed in severe allergic asthma. Current evidence suggests it may decrease exacerbations by augmenting deficient antiviral immune responses in asthma. Like all other biologics, clinical efficacy is greatest in those with elevated T2 biomarkers. Three biologics target the interleukin (IL)-5-eosinophil pathway, including mepolizumab and reslizumab that target IL-5 itself, and benralizumab that targets the IL-5 receptor (IL-5R-α). These drugs all reduce the exacerbation rate in those with raised blood eosinophil counts. Mepolizumab and benralizumab have also demonstrated steroid-sparing efficacy. Reslizumab is the only biologic that is given intravenously rather than by the subcutaneous route. Dupilumab targets the IL-4 receptor and like mepolizumab and benralizumab is effective at reducing exacerbation rate as well as oral corticosteroid requirements. It is also effective for the treatment of nasal polyposis and atopic dermatitis. Tezepelumab is an anti-TSLP (thymic stromal lymphopoietin) mAb that has recently completed phase 3 trials demonstrating significant reductions in exacerbation rate even at lower T2 biomarker thresholds. Many patients with severe asthma qualify for more than one biologic. To date, there are no head-to-head trials to aid physicians in this choice. However, post-hoc analyses have identified certain clinical characteristics that are associated with superior responses to some therapies. The presence of allergic and/or eosinophilic comorbidities, such as atopic dermatitis, nasal polyposis or eosinophilic granulomatosis with polyangiitis, that may additionally benefit by the choice of biologic should also be taken into consideration, as should patient preferences which may include dosing frequency. To date, all biologics have been shown to have excellent safety profiles.
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Project description:To ensure online collaborative learning meets the intended pedagogical goals (is actually collaborative and stimulates learning), mechanisms are needed for monitoring the efficiency of online collaboration. Various studies have indicated that social network analysis can be particularly effective in studying students' interactions in online collaboration. However, research in education has only focused on the theoretical potential of using SNA, not on the actual benefits they achieved. This study investigated how social network analysis can be used to monitor online collaborative learning, find aspects in need of improvement, guide an informed intervention, and assess the efficacy of intervention using an experimental, observational repeated-measurement design in three courses over a full-term duration. Using a combination of SNA-based visual and quantitative analysis, we monitored three SNA constructs for each participant: the level of interactivity, the role, and position in information exchange, and the role played by each participant in the collaboration. On the group level, we monitored interactivity and group cohesion indicators. Our monitoring uncovered a non-collaborative teacher-centered pattern of interactions in the three studied courses as well as very few interactions among students, limited information exchange or negotiation, and very limited student networks dominated by the teacher. An intervention based on SNA-generated insights was designed. The intervention was structured into five actions: increasing awareness, promoting collaboration, improving the content, preparing teachers, and finally practicing with feedback. Evaluation of the intervention revealed that it has significantly enhanced student-student interactions and teacher-student interactions, as well as produced a collaborative pattern of interactions among most students and teachers. Since efficient and communicative activities are essential prerequisites for successful content discussion and for realizing the goals of collaboration, we suggest that our SNA-based approach will positively affect teaching and learning in many educational domains. Our study offers a proof-of-concept of what SNA can add to the current tools for monitoring and supporting teaching and learning in higher education.
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Project description:It is common practice for assessment programs to organize qualifying sessions during which the raters (often known as "markers" or "judges") demonstrate their consistency before operational rating commences. Because of the high-stakes nature of many rating activities, the research community tends to continuously explore new methods to analyze rating data. We used simulated and empirical data from two high-stakes language assessments, to propose a new approach, based on social network analysis and exponential graph models, to evaluate the readiness of a group of raters for operational rating. The results of this innovative approach are compared with the results of a Rasch analysis, which is a well-established approach for the analysis of such data. We also demonstrate how the new approach can be practically used to investigate important research questions such as whether rater severity is stable across rating tasks. The merits of the new approach, and the consequences for practice are discussed.
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Project description:Functional analysis (FA) is an integral component of behavioral assessment and treatment given that clinicians design behavioral treatments based on FA results. Unfortunately, the interrater reliability of FA data interpretation by visual analysis can be inconsistent, potentially leading to ineffective treatment implementation. Hall et al. (2020) recently developed automated nonparametric statistical analysis (ANSA) to facilitate the interpretation of FA data and Kranak et al. (2021) subsequently extended and validated ANSA by applying it to unpublished clinical data. The results of both Hall et al. and Kranak et al. support ANSA as an emerging statistical supplement for interpreting FA data. In the present article, we show how ANSA can be applied to interpret FA data collected in clinical settings in multielement and pairwise designs. We provide a detailed overview of the calculations involved, how to use ANSA in practice, and recommendations for its implementation. A free web-based application is available at https://ansa.shinyapps.io/ansa/.Supplementary informationThe online version contains supplementary material available at 10.1007/s40614-021-00290-2.
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Project description:Although social neuroscience is concerned with understanding how the brain interacts with its social environment, prevailing research in the field has primarily considered the human brain in isolation, deprived of its rich social context. Emerging work in social neuroscience that leverages tools from network analysis has begun to advance knowledge of how the human brain influences and is influenced by the structures of its social environment. In this paper, we provide an overview of key theory and methods in network analysis (especially for social systems) as an introduction for social neuroscientists who are interested in relating individual cognition to the structures of an individual's social environments. We also highlight some exciting new work as examples of how to productively use these tools to investigate questions of relevance to social neuroscientists. We include tutorials to help with practical implementations of the concepts that we discuss. We conclude by highlighting a broad range of exciting research opportunities for social neuroscientists who are interested in using network analysis to study social systems.
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Project description:Any modeler who has attempted to reproduce a spiking neural network model from its description in a paper has discovered what a painful endeavor this is. Even when all parameters appear to have been specified, which is rare, typically the initial attempt to reproduce the network does not yield results that are recognizably akin to those in the original publication. Causes include inaccurately reported or hidden parameters (e.g., wrong unit or the existence of an initialization distribution), differences in implementation of model dynamics, and ambiguities in the text description of the network experiment. The very fact that adequate reproduction often cannot be achieved until a series of such causes have been tracked down and resolved is in itself disconcerting, as it reveals unreported model dependencies on specific implementation choices that either were not clear to the original authors, or that they chose not to disclose. In either case, such dependencies diminish the credibility of the model's claims about the behavior of the target system. To demonstrate these issues, we provide a worked example of reproducing a seminal study for which, unusually, source code was provided at time of publication. Despite this seemingly optimal starting position, reproducing the results was time consuming and frustrating. Further examination of the correctly reproduced model reveals that it is highly sensitive to implementation choices such as the realization of background noise, the integration timestep, and the thresholding parameter of the analysis algorithm. From this process, we derive a guideline of best practices that would substantially reduce the investment in reproducing neural network studies, whilst simultaneously increasing their scientific quality. We propose that this guideline can be used by authors and reviewers to assess and improve the reproducibility of future network models.
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Project description:Network analysis is on the rise across scientific disciplines because of its ability to reveal complex, and often emergent, patterns and dynamics. Nonetheless, a growing concern in network analysis is the use of limited data for constructing networks. This concern is strikingly relevant to ecology and conservation biology, where network analysis is used to infer connectivity across landscapes. In this context, movement among patches is the crucial parameter for interpreting connectivity but because of the difficulty of collecting reliable movement data, most network analysis proceeds with only indirect information on movement across landscapes rather than using observed movement to construct networks. Statistical models developed for social networks provide promising alternatives for landscape network construction because they can leverage limited movement information to predict linkages. Using two mark-recapture datasets on individual movement and connectivity across landscapes, we test whether commonly used network constructions for interpreting connectivity can predict actual linkages and network structure, and we contrast these approaches to social network models. We find that currently applied network constructions for assessing connectivity consistently, and substantially, overpredict actual connectivity, resulting in considerable overestimation of metapopulation lifetime. Furthermore, social network models provide accurate predictions of network structure, and can do so with remarkably limited data on movement. Social network models offer a flexible and powerful way for not only understanding the factors influencing connectivity but also for providing more reliable estimates of connectivity and metapopulation persistence in the face of limited data.
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