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Novel chaotic oppositional fruit fly optimization algorithm for feature selection applied on COVID 19 patients' health prediction.

ABSTRACT: The fast-growing quantity of information hinders the process of machine learning, making it computationally costly and with substandard results. Feature selection is a pre-processing method for obtaining the optimal subset of features in a data set. Optimization algorithms struggle to decrease the dimensionality while retaining accuracy in high-dimensional data set. This article proposes a novel chaotic opposition fruit fly optimization algorithm, an improved variation of the original fruit fly algorithm, advanced and adapted for binary optimization problems. The proposed algorithm is tested on ten unconstrained benchmark functions and evaluated on twenty-one standard datasets taken from the Univesity of California, Irvine repository and Arizona State University. Further, the presented algorithm is assessed on a coronavirus disease dataset, as well. The proposed method is then compared with several well-known feature selection algorithms on the same datasets. The results prove that the presented algorithm predominantly outperform other algorithms in selecting the most relevant features by decreasing the number of utilized features and improving classification accuracy.

SUBMITTER: Bacanin N

PROVIDER: S-EPMC9550095 | biostudies-literature | 2022

REPOSITORIES: biostudies-literature

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Novel chaotic oppositional fruit fly optimization algorithm for feature selection applied on COVID 19 patients' health prediction.

Bacanin Nebojsa N Budimirovic Nebojsa N K Venkatachalam V Strumberger Ivana I Alrasheedi Adel Fahad AF Abouhawwash Mohamed M

PloS one 20221010 10

The fast-growing quantity of information hinders the process of machine learning, making it computationally costly and with substandard results. Feature selection is a pre-processing method for obtaining the optimal subset of features in a data set. Optimization algorithms struggle to decrease the dimensionality while retaining accuracy in high-dimensional data set. This article proposes a novel chaotic opposition fruit fly optimization algorithm, an improved variation of the original fruit fly ...[more]

PMID: 36215218

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Project description:Metaheuristic optimization algorithms manage the search process to explore search domains efficiently and are used efficiently in large-scale, complex problems. Transient Search Algorithm (TSO) is a recently proposed physics-based metaheuristic method inspired by the transient behavior of switched electrical circuits containing storage elements such as inductance and capacitance. TSO is still a new metaheuristic method; it tends to get stuck with local optimal solutions and offers solutions with low precision and a sluggish convergence rate. In order to improve the performance of metaheuristic methods, different approaches can be integrated and methods can be hybridized to achieve faster convergence with high accuracy by balancing the exploitation and exploration stages. Chaotic maps are effectively used to improve the performance of metaheuristic methods by escaping the local optimum and increasing the convergence rate. In this study, chaotic maps are included in the TSO search process to improve performance and accelerate global convergence. In order to prevent the slow convergence rate and the classical TSO algorithm from getting stuck in local solutions, 10 different chaotic maps that generate chaotic values instead of random values in TSO processes are proposed for the first time. Thus, ergodicity and non-repeatability are improved, and convergence speed and accuracy are increased. The performance of Chaotic Transient Search Algorithm (CTSO) in global optimization was investigated using the IEEE Congress on Evolutionary Computation (CEC)'17 benchmarking functions. Its performance in real-world engineering problems was investigated for speed reducer, tension compression spring, welded beam design, pressure vessel, and three-bar truss design problems. In addition, the performance of CTSO as a feature selection method was evaluated on 10 different University of California, Irvine (UCI) standard datasets. The results of the simulation showed that Gaussian and Sinusoidal maps in most of the comparison functions, Sinusoidal map in most of the real-world engineering problems, and finally the generally proposed CTSOs in feature selection outperform standard TSO and other competitive metaheuristic methods. Real application results demonstrate that the suggested approach is more effective than standard TSO.

Project description:BackgroundExisting feature selection methods typically do not consider prior knowledge in the form of structural relationships among features. In this study, the features are structured based on prior knowledge into groups. The problem addressed in this article is how to select one representative feature from each group such that the selected features are jointly discriminating the classes. The problem is formulated as a binary constrained optimization and the combinatorial optimization is relaxed as a convex-concave problem, which is then transformed into a sequence of convex optimization problems so that the problem can be solved by any standard optimization algorithm. Moreover, a block coordinate gradient descent optimization algorithm is proposed for high dimensional feature selection, which in our experiments was four times faster than using a standard optimization algorithm.ResultsIn order to test the effectiveness of the proposed formulation, we used microarray analysis as a case study, where genes with similar expressions or similar molecular functions were grouped together. In particular, the proposed block coordinate gradient descent feature selection method is evaluated on five benchmark microarray gene expression datasets and evidence is provided that the proposed method gives more accurate results than the state-of-the-art gene selection methods. Out of 25 experiments, the proposed method achieved the highest average AUC in 13 experiments while the other methods achieved higher average AUC in no more than 6 experiments.ConclusionA method is developed to select a feature from each group. When the features are grouped based on similarity in gene expression, we showed that the proposed algorithm is more accurate than state-of-the-art gene selection methods that are particularly developed to select highly discriminative and less redundant genes. In addition, the proposed method can exploit any grouping structure among features, while alternative methods are restricted to using similarity based grouping.

Dataset Information

Novel chaotic oppositional fruit fly optimization algorithm for feature selection applied on COVID 19 patients' health prediction.

Publications

Novel chaotic oppositional fruit fly optimization algorithm for feature selection applied on COVID 19 patients' health prediction.

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