Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Draft Genomic Sequences of Pseudomonas moorei Strains Isolated from Wild Cranberry Bogs in Massachusetts.

ABSTRACT: Pseudomonas moorei has been used to detoxify recalcitrant environmental contaminants from the pharmaceutical industry. Two P. moorei strains were isolated from soil in the pristine wild cranberry bogs of the Cape Cod National Seashore that putatively encode genes for degradation of 4- and 5-chlorosalicylates, acetaminophen, and diclofenac.

SUBMITTER: Sadeghi N

PROVIDER: S-EPMC9584317 | biostudies-literature | 2022 Oct

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Draft Genomic Sequences of Pseudomonas moorei Strains Isolated from Wild Cranberry Bogs in Massachusetts.

Sadeghi Nima N Kaur Kiranpreet K Soby Scott S

Microbiology resource announcements 20220922 10

Pseudomonas moorei has been used to detoxify recalcitrant environmental contaminants from the pharmaceutical industry. Two <i>P. moorei</i> strains were isolated from soil in the pristine wild cranberry bogs of the Cape Cod National Seashore that putatively encode genes for degradation of 4- and 5-<i>chloro</i>salicylates, acetaminophen, and diclofenac. ...[more]

PMID: 36135385

Similar Datasets

Draft Genome Sequences of Pseudomonas sp. Strains MWU 12-2029, MWU 12-3088, and MWU 12-3091, Isolated from Wild and Cultivated Massachusetts Cranberry Bogs.

Project description:Pseudomonas sp. strains MWU12-2029, MWU12-3088, and MWU12-3091 were isolated from wild and cultivated cranberry bog soils in southeastern Massachusetts. The three isolates are closely related to Pseudomonas kribbensis, a not validly published member of the P. fluorescens group, and contain three putative insecticidal protein genes, including the toxin complex A gene (tcaC).

| S-EPMC9670975 | biostudies-literature

Draft Genome Sequence of Pseudomonas sp. Strains MWU12-2020 and MWU12-3103b, Isolated from Wild and Cultivated Cranberry Bogs in Massachusetts.

Project description:Here, we present the draft genome sequences of Pseudomonas sp. strains MWU12-2020 and MWU12-3103b, isolated from the rhizospheres of wild and cultivated cranberry bogs in southeastern Massachusetts; these strains are unrelated to known Pseudomonas species. The genomes of both isolates exceed 6 Mbp and contain predicted ice nucleation and type VI and III secretion system genes.

| S-EPMC9584209 | biostudies-literature

Draft Genome Sequences of Pseudomonas spp. Isolated from Berry Surfaces in Commercial Cranberry Bogs in Massachusetts, USA.

Project description:The surfaces of plants are colonized by a rich diversity of microbes but are largely unexplored. Here, we present the draft genome sequences of five Pseudomonas spp. isolated from cultivated cranberry fruit surfaces. Although the isolates represent four different species, their genomes all contain conserved iron sequestration and uptake genes.

| S-EPMC8265235 | biostudies-literature

Draft Genome Sequence of Pseudomonas protegens Strain MWU12-2233, Isolated from Wild Cranberry Fruit in Provincetown, Massachusetts.

Project description:Pseudomonas protegens strain MWU12-2233 was isolated from wild cranberry fruit surfaces in Provincetown, MA. The genome contains putative hydrogen cyanide synthase and type VI secretion systems which can act symbiotically on plant health by suppressing competitors, indicating a role in indigenous microfloral disease and insect pest suppression.

| S-EPMC9387235 | biostudies-literature

Draft Genome Sequence of Pseudomonas sp. Strain MWU12-2534b, Isolated from a Wild Cranberry Bog in Truro, Massachusetts.

Project description:An unknown Pseudomonas sp. most closely related to Pseudomonas ficuserectae and Pseudomonas protegens was isolated from the rhizospheres of wild cranberry plants in the Cape Cod National Seashore, in the United States. The draft genome of MWU12-2534b is 6.7 Mbp, has 63.32% GC content, and contains multiple potential virulence and antibiotic resistance genes.

| S-EPMC6256566 | biostudies-literature

Draft Genome Sequence of Pseudomonas sp. Strain MWU13-2860, Isolated from a Wild Cranberry Bog in Truro, Massachusetts.

Project description:Pseudomonas sp. strain MWU13-2860 was isolated from the rhizosphere of wild cranberry plants and is not closely related to Pseudomonas spp. frequently isolated from soil. Its genome is 7.2 Mbp, with 61.24% G+C content, and contains homologs that may encode the carbohydrate-degrading enzymes xylanase, laccase, cellulase, alginate lyase, amylase, and chitinase.

| S-EPMC6256550 | biostudies-literature

Draft Genome Sequence of Pseudomonas sp. Strain MWU12-2323, Isolated from a Wild Cranberry Bog in Truro, Massachusetts.

Project description:Exploration of novel environments such as low-pH wild cranberry bog soils yields a rich diversity of bacteria, including Pseudomonas spp. Here, we present the draft genome sequence of Pseudomonas sp. strain MWU12-2323, isolated from wild cranberry plant rhizosphere. The genome has secondary metabolite genes encoding carbohydrate polymer-degrading enzymes.

| S-EPMC6952666 | biostudies-literature

Draft Genome Sequences of Pseudomonas sp. Strains MWU13-2100 and MWU13-2105 Isolated from Wild Cranberry Bog Soil in the Cape Cod National Seashore.

Project description:Pseudomonas sp. strains MWU13-2100 and MWU13-2105 were isolated from a wild cranberry bog with Pipestone loamy coarse sand soil in Truro, Massachusetts, and taxonomically assigned based on whole-genome sequences. The draft genomes are most closely related to P. batumici (41.4% and 41.8% dDDHd4), but with only 50.8 dDDHd4 to each other.

| S-EPMC9584206 | biostudies-literature

Draft Genome Sequence of Aquitalea sp. Strain MWU14-2217, Isolated from a Wild Cranberry Bog in Provincetown, Massachusetts.

Project description:Aquitalea sp. strain MWU14-2217 was isolated from wild cranberry bog soils in the Cape Cod National Seashore. The draft genome is 4.3 Mbp with 4,133 coding sequences and contains predicted genes for phenazines, colicins, siderophores, and putative exporters of these compounds and genes responsible for motility and biofilm formation.

| S-EPMC6284732 | biostudies-literature

Draft Genome Sequence of Pseudomonas sp. Strain MWU13-3659, Isolated from Commercial Cranberry Bog Soil in Massachusetts, USA.

Project description:Pseudomonas sp. strain MWU13-3659 was isolated from cultivated cranberry bog soil in Massachusetts, USA. Its closest known relative is Pseudomonas entomophila (digital DNA-DNA hybridization [d4 formula] value of 57.2% and average nucleotide identity based on BLAST value of 93.90), and its genome contains putative gene clusters for the production of polyketides, siderophores, and cyclic lipopeptides that have insecticidal activity in other proteobacteria.

| S-EPMC9670869 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data