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Exploration of Tools for the Interpretation of Human Non-Coding Variants.


ABSTRACT: The advent of Whole Genome Sequencing (WGS) broadened the genetic variation detection range, revealing the presence of variants even in non-coding regions of the genome, which would have been missed using targeted approaches. One of the most challenging issues in WGS analysis regards the interpretation of annotated variants. This review focuses on tools suitable for the functional annotation of variants falling into non-coding regions. It couples the description of non-coding genomic areas with the results and performance of existing tools for a functional interpretation of the effect of variants in these regions. Tools were tested in a controlled genomic scenario, representing the ground-truth and allowing us to determine software performance.

SUBMITTER: Tabarini N 

PROVIDER: S-EPMC9654743 | biostudies-literature | 2022 Oct

REPOSITORIES: biostudies-literature

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Exploration of Tools for the Interpretation of Human Non-Coding Variants.

Tabarini Nicole N   Biagi Elena E   Uva Paolo P   Iovino Emanuela E   Pippucci Tommaso T   Seri Marco M   Cavalli Andrea A   Ceccherini Isabella I   Rusmini Marta M   Viti Federica F  

International journal of molecular sciences 20221026 21


The advent of Whole Genome Sequencing (WGS) broadened the genetic variation detection range, revealing the presence of variants even in non-coding regions of the genome, which would have been missed using targeted approaches. One of the most challenging issues in WGS analysis regards the interpretation of annotated variants. This review focuses on tools suitable for the functional annotation of variants falling into non-coding regions. It couples the description of non-coding genomic areas with  ...[more]

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