Unknown

Dataset Information

0

Bioinformatic analysis and clinical diagnostic value of hsa_circ_0004099 in acute ischemic stroke.


ABSTRACT: This study investigates the expression and effect of hsa_circ_0004099 in acute ischemic stroke (AIS). We conducted a case-controlled study that included 40 patients with AIS within 24 hours and 40 healthy subjects during the same period as a control group. Differentially expressed circular RNAs (circRNAs) were obtained using GEO2R, and the expression of hsa_circ_0004099 was verified using RT-PCR. Correlation analysis of the National Institutes of Health Stroke Scale (NIHSS) disease severity score and ischemic time with hsa_circ_0004099 expression levels was also performed. The receiver operating characteristic (ROC) curve of hsa_circ_0004099 was constructed, and bioinformatic analysis of hsa_circ_0004099 was performed. NIHSS scores negatively correlated with hsa_circ_0004099 levels (P<0.001, r = -0.7053), whereas infarct time was negatively correlated with hsa_circ_0004099 levels (P<0.001, r = -0.5130); hsa_circ_0004099 could benefit clinical diagnosis (area under the curve [AUC]: 0.923 [95% confidence interval [CI]: 0.8680-0.9904]). Kyoto encyclopedia of genes and genomes (KEGG) analysis showed that hsa_circ_0004099 was enriched in several cancer pathways, which were collectively enriched in four genes namely TCF7L2, NRAS, CTNNB1, and KRAS. Eight core proteins were screened using a protein-protein interaction (PPI) network namely SMAD4, HIF1A, CTNNB1, CDKN1B, CDK6, FOXO3, KRAS, and NRAS. hsa_circ_0004099 is a potential clinical diagnostic marker. In addition, the possible role of hsa_circ_0004099 in the pathogenesis of AIS was analyzed using bioinformatics, which provided a new potential molecular target for AIS treatment.

SUBMITTER: Zheng J 

PROVIDER: S-EPMC9674149 | biostudies-literature | 2022

REPOSITORIES: biostudies-literature

altmetric image

Publications

Bioinformatic analysis and clinical diagnostic value of hsa_circ_0004099 in acute ischemic stroke.

Zheng Jiqing J   Luo Shuiming S   Long Yaobin Y  

PloS one 20221118 11


This study investigates the expression and effect of hsa_circ_0004099 in acute ischemic stroke (AIS). We conducted a case-controlled study that included 40 patients with AIS within 24 hours and 40 healthy subjects during the same period as a control group. Differentially expressed circular RNAs (circRNAs) were obtained using GEO2R, and the expression of hsa_circ_0004099 was verified using RT-PCR. Correlation analysis of the National Institutes of Health Stroke Scale (NIHSS) disease severity scor  ...[more]

Similar Datasets

| S-EPMC6316722 | biostudies-literature
| S-EPMC9273240 | biostudies-literature
| S-EPMC5701186 | biostudies-literature
| S-EPMC9838205 | biostudies-literature
| S-EPMC3400122 | biostudies-literature
| S-EPMC10472955 | biostudies-literature
| S-EPMC8189849 | biostudies-literature
| S-EPMC3637234 | biostudies-literature
| S-EPMC7650084 | biostudies-literature
| S-EPMC7098249 | biostudies-literature