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Benchmark dataset for the Voronoi diagram of 3D spherical balls.

ABSTRACT: In this paper, we present a dataset to be used for the construction of the Voronoi diagram of 3D spherical balls (VD-B3). The dataset consists of sphere arrangements including general, anomaly, and extreme cases. The dataset also includes protein models downloaded from RCSB Protein Data Bank (PDB). The dataset can be used as a standard benchmark dataset to verify and validate the correctness, efficiency, and robustness of the construction algorithm. The dataset is simple and easy to understand. The details of the experiment and analysis based on this dataset are presented in the original research article: "Robust Construction of the Voronoi Diagram of Spherical Balls in the Three-Dimensional Space" which introduces the topology-oriented incremental algorithm for the construction that is thoroughly validated and compared with two implementations of the well known edge-tracing algorithm.

SUBMITTER: Song C

PROVIDER: S-EPMC9679445 | biostudies-literature | 2022 Dec

REPOSITORIES: biostudies-literature

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Benchmark dataset for the Voronoi diagram of 3D spherical balls.

Song Chanyoung C Lee Mokwon M Choi Seunghwan S Kim Deok-Soo DS

Data in brief 20220914

In this paper, we present a dataset to be used for the construction of the Voronoi diagram of 3D spherical balls (VD-B3). The dataset consists of sphere arrangements including general, anomaly, and extreme cases. The dataset also includes protein models downloaded from RCSB Protein Data Bank (PDB). The dataset can be used as a standard benchmark dataset to verify and validate the correctness, efficiency, and robustness of the construction algorithm. The dataset is simple and easy to understand. ...[more]

PMID: 36426006

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