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Three-dimensional chromatin architecture datasets for aging and Alzheimer's disease.

ABSTRACT: Recently, increasing studies are indicating a close association between dysregulated enhancers and neurodegenerative diseases, such as Alzheimer's disease (AD). However, their contributions were poorly defined for lacking direct links to disease genes. To bridge this gap, we presented the Hi-C datasets of 4 AD patients, 4 dementia-free aged and 3 young subjects, including 30 billion reads. As applications, we utilized them to link the AD risk SNPs and dysregulated epigenetic marks to the target genes. Combining with epigenetic data, we observed more detailed interactions among regulatory regions and found that many known AD risk genes were under long-distance promoter-enhancer interactions. For future AD and aging studies, our datasets provide a reference landscape to better interpret findings of association and epigenetic studies for AD and aging process.

SUBMITTER: Meng G

PROVIDER: S-EPMC9873630 | biostudies-literature | 2023 Jan

REPOSITORIES: biostudies-literature

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Three-dimensional chromatin architecture datasets for aging and Alzheimer's disease.

Meng Guofeng G Xu Hong H Lu Dong D Li Shensuo S Zhao Zhenzhen Z Li Haohao H Zhang Weidong W

Scientific data 20230124 1

Recently, increasing studies are indicating a close association between dysregulated enhancers and neurodegenerative diseases, such as Alzheimer's disease (AD). However, their contributions were poorly defined for lacking direct links to disease genes. To bridge this gap, we presented the Hi-C datasets of 4 AD patients, 4 dementia-free aged and 3 young subjects, including 30 billion reads. As applications, we utilized them to link the AD risk SNPs and dysregulated epigenetic marks to the target ...[more]

PMID: 36693875

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