Base-pairing probability matrixes for group I introns identified in the NT database

ABSTRACT: Base-pairing probability matrixes for the set of 42,459 group I introns identified in the NT database through Infernal covariance model search with reliable boundaries. These were calculated with EternaFold, CONTRAfold, ViennaRNA, NUPACK, RNAstructure and RNAsoft. Matrixes calculated for all introns with all software are provided all together in file BPPs.tar.gz. After decompressing, the provided dataset contains 6 folders, each containing individual matrixes for each intron with one of the 6 software packages. Each individual matrix is provided as .npy file (NumPy object). Additionally, files BPPs_(software).tar contain only the matrixes for all introns with the corresponding software. In this case, matrixes are given as compressed .npy files (.npy.xz), and therefore must be decompressed individually.

ORGANISM(S): Multi-organism

SUBMITTER:  

PROVIDER: S-BSST1399 | biostudies-other |

REPOSITORIES: biostudies-other