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Analysis of DNA methylation profile of Korean chronic lymphocytic leukaemia (CLL) patients with MeDIP-Seq


ABSTRACT: In this study, we performed genome-wide methylation profiling of eight CLL patients and five control subjects, in an Asian cohort. Methyl-CpG-binding domain sequencing (MBD-Seq) was used as the profiling method. Differential methylation analysis identified a number of differentially methylated regions (DMRs) and genes (DMGs). More regions were hypomethylated than were hypermethylated. Promoters contained the highest proportion of DMRs, while distal intergenic and intron regions contained the largest number of DMRs. Gene Ontology, pathway analysis, and network-based prioritization of DMGs were also performed.

ORGANISM(S): Homo sapiens (human)

SUBMITTER: Seungwoo Hwang 

PROVIDER: S-BSST661 | biostudies-other |

SECONDARY ACCESSION(S): 31974418

REPOSITORIES: biostudies-other

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Publications

Novel genes exhibiting DNA methylation alterations in Korean patients with chronic lymphocytic leukaemia: a methyl-CpG-binding domain sequencing study.

Kim Miyoung M   Lee Eunyup E   Zang Dae Young DY   Kim Hyo Jung HJ   Kim Ho Young HY   Han Boram B   Kim Han-Sung HS   Kang Hee Jung HJ   Hwang Seungwoo S   Lee Young Kyung YK  

Scientific reports 20200123 1


Chronic lymphocytic leukaemia (CLL) exhibits differences between Asians and Caucasians in terms of incidence rate, age at onset, immunophenotype, and genetic profile. We performed genome-wide methylation profiling of CLL in an Asian cohort for the first time. Eight Korean patients without somatic immunoglobulin heavy chain gene hypermutations underwent methyl-CpG-binding domain sequencing (MBD-seq), as did five control subjects. Gene Ontology, pathway analysis, and network-based prioritization o  ...[more]

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