Ontology highlight
ABSTRACT:
SUBMITTER: Fang F
PROVIDER: S-EPMC1538810 | biostudies-other | 2006 Jul
REPOSITORIES: biostudies-other
Fang Fei F Blanchette Mathieu M
Nucleic acids research 20060701 Web Server issue
FootPrinter3 is a web server for predicting transcription factor binding sites by using phylogenetic footprinting. Until now, phylogenetic footprinting approaches have been based either on multiple alignment analysis (e.g. PhyloVista, PhastCons), or on motif-discovery algorithms (e.g. FootPrinter2). FootPrinter3 integrates these two approaches, making use of local multiple sequence alignment blocks when those are available and reliable, but also allowing finding motifs in unalignable regions. Th ...[more]