Dataset Information

Nucleotide sequence and transcription of the right early region of bacteriophage PRD1.

ABSTRACT: We have sequenced the rightmost 1,700 base pairs of bacteriophage PRD1. This region encompasses the right early region and completes the sequence of all PRD1 early functions. We have also mapped the 5' initiation site of right early transcripts in vivo and in vitro. This has allowed us to assign gene XII to an open reading frame and suggests that another open reading frame may also be expressed. Gene XII, which has been implicated in the replication process and the regulation of gene expression, is predicted to encode a protein with a molecular mass of 16.7 kilodaltons. Data base searches have revealed no significant homology between the product of this gene and other proteins. Transcription mapping studies have revealed that right early transcripts elongate from right to left and have enabled us to identify the right early promoter. This promoter behaves identically in vivo and in vitro. We also demonstrate that this promoter directs the transcription of two RNAs of different sizes in vitro.

SUBMITTER: Gerendasy D

PROVIDER: S-EPMC208683 | biostudies-other | 1990 Apr

REPOSITORIES: biostudies-other

ACCESS DATA

Publications

Nucleotide sequence and transcription of the right early region of bacteriophage PRD1.

Gerendasy D D Ito J J

Journal of bacteriology 19900401 4

We have sequenced the rightmost 1,700 base pairs of bacteriophage PRD1. This region encompasses the right early region and completes the sequence of all PRD1 early functions. We have also mapped the 5' initiation site of right early transcripts in vivo and in vitro. This has allowed us to assign gene XII to an open reading frame and suggests that another open reading frame may also be expressed. Gene XII, which has been implicated in the replication process and the regulation of gene expression, ...[more]

PMID: 2180910

Similar Datasets

Project description:BackgroundPreviously, we distinguished the Escherichia coli type II cytoplasmic membrane translocation pathways of Tat, Yid, and Sec for unfolded and folded soluble target proteins. The translocation of folded protein to the periplasm for soluble expression via the Tat pathway was controlled by an N-terminal hydrophilic leader sequence. In this study, we investigated the effect of the hydrophilic C-terminal end and its nucleotide sequence on total and soluble protein expression.ResultsThe native hydrophilic C-terminal end of GFP was obtained by deleting the C-terminal peptide LeuGlu-6×His, derived from pET22b(+). The corresponding clones induced total and soluble GFP expression that was either slightly increased or dramatically reduced, apparently through reconstruction of the nucleotide sequence around the stop codon in the 3' region. In the expression-induced clones, the hydrophilic C-terminus showed increased Tat pathway specificity for soluble expression. However, in the expression-reduced clone, after analyzing the role of the 5' poly(A) coding sequence with a substituted synonymous codon, we proved that the longer 5' poly(A) coding sequence interacted with the reconstructed 3' region nucleotide sequence to create a new mRNA tertiary structure between the 5' and 3' regions, which resulted in reduced total GFP expression. Further, to recover the reduced expression by changing the 3' nucleotide sequence, after replacing selected C-terminal 5' codons and the stop codon in the ORF with synonymous codons, total GFP expression in most of the clones was recovered to the undeleted control level. The insertion of trinucleotides after the stop codon in the 3'-UTR recovered or reduced total GFP expression. RT-PCR revealed that the level of total protein expression was controlled by changes in translational or transcriptional regulation, which were induced or reduced by the substitution or insertion of 3' region nucleotides.ConclusionsWe found that the hydrophilic C-terminal end of GFP increased Tat pathway specificity and that the 3' nucleotide sequence played an important role in total protein expression through translational and transcriptional regulation. These findings may be useful for efficiently producing recombinant proteins as well as for potentially controlling the expression level of specific genes in the body for therapeutic purposes.

Dataset Information

Nucleotide sequence and transcription of the right early region of bacteriophage PRD1.

Publications

Nucleotide sequence and transcription of the right early region of bacteriophage PRD1.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets