Browse
Submit Data
Databases
API
Help

Dataset Information

8 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Benzene-1,3-diammonium bis-(pyridine-2,6-dicarboxyl-ato-?O,N,O)cobaltate(II) penta-hydrate.

ABSTRACT: In the title compound, (C(6)H(10)N(2))[Co(C(7)H(3)NO(4))(2)]·5H(2)O, the Co(II) ion is six-coordinated in an N(2)O(4) environment by two pyridine-2,6-dicarboxyl-ate (pydc) ligands, having a distorted octa-hedral geometry. The crystal packing is stabilized by inter-molecular N-H?O, O-H?O and weak C-H?O hydrogen bonds. There are also ?-? inter-actions between the pyridine rings of the pydc ligands and between the pydc ligands and the benzene-1,3-diammonium cations, with centroid-centroid distances of 3.4575?(15) and 3.7521?(15)?Å.

SUBMITTER: Pasdar H

PROVIDER: S-EPMC3099797 | biostudies-other | 2011 Apr

REPOSITORIES: biostudies-other

ACCESS DATA

Json Xml

Publications

Benzene-1,3-diammonium bis-(pyridine-2,6-dicarboxyl-ato-κO,N,O)cobaltate(II) penta-hydrate.

Pasdar Hoda H Sadat Kashani Saghi S Ghiasi Reza R Aghabozorg Hossein H Notash Behrouz B

Acta crystallographica. Section E, Structure reports online 20110331 Pt 4

In the title compound, (C(6)H(10)N(2))[Co(C(7)H(3)NO(4))(2)]·5H(2)O, the Co(II) ion is six-coordinated in an N(2)O(4) environment by two pyridine-2,6-dicarboxyl-ate (pydc) ligands, having a distorted octa-hedral geometry. The crystal packing is stabilized by inter-molecular N-H⋯O, O-H⋯O and weak C-H⋯O hydrogen bonds. There are also π-π inter-actions between the pyridine rings of the pydc ligands and between the pydc ligands and the benzene-1,3-diammonium cations, with centroid-centroid distances ...[more]

PMID: 21754013

Similar Datasets

Benzene-1,3-diammonium bis-(pyridine-2,6-dicarboxyl-ato)nickelate(II) penta-hydrate.

Project description:In the title compound, (C(6)H(10)N(2))[Ni(C(7)H(3)NO(4))(2)]·5H(2)O, the Ni(II) ion is six-coordinated by two N and four O atoms from two pyridine-2,6-dicarboxyl-ate ligands in a distorted octa-hedral fashion. The crystal packing is stabilized by inter-molecular O-H?O and N-H?O and weak C-H?O hydrogen bonds and ?-? inter-actions [centroid-centroid distances = 3.4669?(19) and 3.764?(2)?Å].

| S-EPMC3051631 | biostudies-literature

(Propane-1,3-diammonium) bis-(4-hydroxy-pyridine-2,6-dicarboxyl-ato-?O,N,O)zinc(II) 3.5-hydrate.

Project description:The asymmetric unit of the title compound, (C(3)H(12)N(2))[Zn(C(7)H(3)NO(5))(2)]·3.5H(2)O, contains two formula units. The compound consists of an anionic complex, a doubly protonated propane-1,3-diamine as a counter-ion and 3.5 uncoord-inated water mol-ecules. The coordination polyhedron around the Zn(II )atom is distorted octa-hedral, defined by four O atoms and two N atoms from two Hchel (H(3)chel = 4-hydroxy-pyridine-2,6-dicarboxylic acid) ligands. In the crystal structure, O-H?O, N-H?O and C-H?O hydrogen bonds along with ?-? stacking inter-actions [centroid-centroid distance = 3.473?(2)?Å] are observed to reinforce the crystal cohesion.

| S-EPMC2971239 | biostudies-literature

Acridinium (6-carboxy-pyridine-2-carboxyl-ato)(pyridine-2,6-dicarboxyl-ato)zincate(II) penta-hydrate.

Project description:The reaction of Zn(NO(3))(2) with pyridine-2,6-dicarboxylic acid (pydcH(2)) and acridine (acr) in aqueous solution leads to the formation of the title compound, (C(13)H(10)N)[Zn(C(7)H(3)NO(4))(C(7)H(4)NO(4))]·5H(2)O or (acrH)[Zn(pydcH)(pydc)]·5H(2)O. In the title compound, the Zn(II) atom is coordinated by four O atoms and two N atoms from the tridentate chelating rings of (pydc)(2-) and (pydcH)(-) anions. The geometry of the resulting ZnN(2)O(4) coordination can be described as distorted octa-hedral. To balance the charges, one protonated acridine (acrH)(+) cation is present. In the crystal structure, extensive O-H?O and N-H?O hydrogen bonds involving acrH(+), the complex anion and uncoordinated water mol-ecules form a three-dimensional network.

| S-EPMC2968778 | biostudies-literature

Propane-1,2-diammonium bis-(pyridine-2,6-dicarboxyl-ato-?O,N,O')nickelate(II) tetra-hydrate.

Project description:The reaction of nickel(II) nitrate hexa-hydrate, propane-1,2-diamine and pyridine-2,6-dicarboxylic acid in a 1:2:2 molar ratio in aqueous solution resulted in the formation of the title compound, (C(3)H(12)N(2))[Ni(C(7)H(3)NO(4))(2)]·4H(2)O or (p-1,2-daH(2))[Ni(pydc)(2)]·4H(2)O (where p-1,2-da is propane-1,2-diamine and pydcH(2) is pyridine-2,6-dicarboxylic acid). The geometry of the resulting NiN(2)O(4) coordination can be described as distorted octa-hedral. Considerable C=O?? stacking inter-actions are observed between the carboxyl-ate C=O groups and the pyridine rings of the (pydc)(2-) fragments, with O?? distances of 3.1563?(12) and 3.2523?(12)?Å and C=O?? angles of 95.14?(8) and 94.64?(8)°. In the crystal structure, a wide range of non-covalent inter-actions, consisting of hydrogen bonding [O-H?O, N-H?O and C-H?O, with D?A distances ranging from 2.712?(2) to 3.484?(2)?Å], ion pairing, ?-? [centroid-to-centroid distance = 3.4825?(8)?Å] and C=O?? stacking, connect the various components to form a supra-molecular structure.

| S-EPMC2961796 | biostudies-literature

Piperazine-1,4-diium bis-(pyridine-2,6-dicarboxyl-ato-?O,N,O)cobaltate(II) tetra-hydrate.

Project description:The asymmetric unit of the title complex, (C(4)H(12)N(2))[Co(C(7)H(3)NO(4))(2)]·4H(2)O, consists of one piperazinediium dication, one [Co(py-2,6-dc)(2)](2-) dianion (where py-2,6-dc is pyridine-2,6-dicarboxyl-ate) and four water mol-ecules. The piperazinediium cation adopts a chair conformation and the Co(II) ion is six-coordinated in an N(2)O(4) environment, having a distorted octa-hedral geometry. In the crystal, inter-molecular O-H?O, N-H?O and weak C-H?O hydrogen bonds link the components, forming a three-dimensional network.

| S-EPMC3151836 | biostudies-literature

catena-Poly[4,4'-bipyridinium [[tetra-aqua-(pyridine-2,6-dicarboxyl-ato-κO,N,O)cerate(III)]-μ-pyridine-2,6-dicarboxyl-ato-κO:O,N,O-[(pyridine-2,6-dicarboxyl-ato-κO,N,O)cerate(III)]-μ-pyridine-2,6-dicarboxyl-ato-κO,N,O:O] penta-hydrate].

Project description:The title compound, {(C(10)H(10)N(2))[Ce(2)(C(7)H(3)NO(4))(4)(H(2)O)(4)]·5H(2)O}(n), is composed of a one-dimensional anionic complex, a doubly protonated 4,4'-bipyridine mol-ecule as a counter-ion and five uncoordinated water mol-ecules. The anion bears two nine-coordinate Ce(III) ions, each with a distorted tricapped trigonal-prismatic geometry. In the crystal, inter-molecular C-H⋯O, N-H⋯O and O-H⋯O hydrogen bonds, as well as π-π inter-actions with centroid-centroid distances of 3.514 (3) Å connect the various components into a supra-molecular structure.

| S-EPMC3051934 | biostudies-literature

Triaqua-(benzene-1,3-dicarboxyl-ato)(4,5-diaza-fluoren-9-one)cadmium(II) penta-hydrate.

Project description:In the title compound, [Cd(C(8)H(4)O(4))(C(11)H(6)N(2)O)(H(2)O)(3)]·5H(2)O, the Cd(II) atom is seven-coordinated by two N atoms from one bidentate phenanthroline-derived ligand and by five O atoms, two from one bidentate benzene-1,3-dicarboxyl-ate (1,3-BDC) ligand and three from water mol-ecules, in a distorted penta-gonal-bipyramidal geometry. Neighbouring units inter-act through ?-? inter-actions [centroid-centroid distances = 3.380?(3) and 3.283?(4)?Å]. Finally, three types of O-H?O hydrogen bonds exist between coordinated dissociative water mol-ecules and hybridization water mol-ecules and carboxyl-ate O atoms, resulting in a two-dimensional network parallel to (010).

| S-EPMC3011731 | biostudies-literature

Hexaaqua-nickel(II) tetra-aqua-bis-(?-pyridine-2,6-dicarboxyl-ato)bis-(pyridine-2,6-dicarboxyl-ato)trinickelate(II) octa-hydrate.

Project description:The title compound, [Ni(H(2)O)(6)][Ni(3)(C(7)H(3)NO(4))(4)(H(2)O)(4)]·8H(2)O, was obtained by the reaction of nickel(II) nitrate hexa-hydrate with pyridine-2,6-dicarb-oxy-lic acid (pydcH(2)) and 1,10-phenanothroline (phen) in an aqueous solution. The latter ligand is not involved in formation of the title complex. There are three different Ni(II) atoms in the asymmetric unit, two of which are located on inversion centers, and thus the [Ni(H(2)O)(6)](2+) cation and the trinuclear {[Ni(pydc)(2)](2)-?-Ni(H(2)O)(4)}(2-) anion are centrosymmetric. All Ni(II) atoms exhibit an octa-hedral coordination geometry. Various inter-actions, including numerous O-H?O and C-H?O hydrogen bonds and C-O?? stacking of the pyridine and carboxyl-ate groups [3.570?(1), 3.758?(1) and 3.609?(1)?Å], are observed in the crystal structure.

| S-EPMC3007465 | biostudies-literature

Butane-1,4-diammonium bis-(pyridine-2,6-dicarboxyl-ato)cuprate(II) trihydrate.

Project description:In the title compound, (C(4)H(14)N(2))[Cu(C(7)H(3)NO(4))(2)]·3H(2)O or (bdaH(2))[Cu(pydc)(2)]·3H(2)O (where bda is butane-1,4-diamine and pydcH(2) is pyridine-2,6-dicarboxylic acid), the Cu(II) atom is coordinated by four O atoms [Cu-O = 2.0557?(16)-2.3194?(16)?Å] and two N atoms [Cu-N = 1.9185?(18) and 1.9638?(18)?Å] from two chelating rings of the pydc(2-) anions, which act as tridentate ligands. The geometry of the resulting CuN(2)O(4) coordination can be described as distorted octa-hedral. The the two pydc(2-) fragments are almost perpendicular to one another [77.51?(11)°]. To balance the charges, two centrosymmetric protonated butane-1,4-diammonium, (bdaH(2))(2+) cations are present. In the crystal structure, extensive O-H?O, N-H?O and C-H?O hydrogen bonds [D?A = 2.720?(2)-3.446?(3)?Å], ion pairing, C-O?? [O?? = 3.099?(2)?Å] and ?-? stacking inter-actions between the pydc(2-) rings [centroid-centroid distance = 3.5334?(15)?Å] contribute to the formation of a three-dimensional supra-molecular structure.

| S-EPMC2961264 | biostudies-literature

Creatininium bis-(pyridine-2,6-dicarboxyl-ato)chromate(III) pyridine-2,6-dicarboxylic acid hexa-hydrate.

Project description:The title compound, (C(4)H(8)N(3)O)[Cr(C(7)H(3)NO(4))(2)]·C(7)H(5)NO(4)·6H(2)O, was obtained by the reaction of Cr(NO(3))(3)·9H(2)O with pyridine-2,6-dicarboxylic acid (pydcH(2)) and creatinine (creat) in aqueous solution (molar ratio 1:2:2). The cation is a protonated creatinine (creatH(+)) while the anion is a bis-pydc(2-) Cr(III) complex. The Cr(III) is coordinated by four oxygen and two nitro-gen atoms of two (pydc)(2-) groups and has a disorted octa-hedral coordination environment. The structure also contains a neutral mol-ecule of pydcH(2) that is hydrogen bonded to the creatH(+) and six mol-ecules of water. Extensive inter-molecular inter-actions, including seventeen classical hydrogen bonds, two weak C-H?O bonds, and C-O?? stacking inter-actions, with O?centroid distances of 3.211?(13) and 3.300?(12)?Å, connect the various components in the crystal structure.

| S-EPMC2959312 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data