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YADA: a tool for taking the most out of high-resolution spectra.

ABSTRACT: YADA can deisotope and decharge high-resolution mass spectra from large peptide molecules, link the precursor monoisotopic peak information to the corresponding tandem mass spectrum, and account for different co-fragmenting ion species (multiplexed spectra). We describe how YADA enables a pipeline consisting of ProLuCID and DTASelect for analyzing large-scale middle-down proteomics data.http://fields.scripps.edu/yada

SUBMITTER: Carvalho PC

PROVIDER: S-EPMC3140806 | biostudies-other | 2009 Oct

REPOSITORIES: biostudies-other

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YADA: a tool for taking the most out of high-resolution spectra.

Carvalho Paulo C PC Xu Tao T Han Xuemei X Cociorva Daniel D Barbosa Valmir C VC Yates John R JR

Bioinformatics (Oxford, England) 20090814 20

<h4>Unlabelled</h4>YADA can deisotope and decharge high-resolution mass spectra from large peptide molecules, link the precursor monoisotopic peak information to the corresponding tandem mass spectrum, and account for different co-fragmenting ion species (multiplexed spectra). We describe how YADA enables a pipeline consisting of ProLuCID and DTASelect for analyzing large-scale middle-down proteomics data.<h4>Availability</h4>http://fields.scripps.edu/yada ...[more]

PMID: 19684088

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