Unknown

Dataset Information

0

MS/MS library facilitated MRM quantification of native peptides prepared by denaturing ultrafiltration.


ABSTRACT: Naturally occurring native peptides provide important information about physiological states of an organism and its changes in disease conditions but protocols and methods for assessing their abundance are not well-developed. In this paper, we describe a simple procedure for the quantification of non-tryptic peptides in body fluids. The workflow includes an enrichment step followed by two-dimensional fractionation of native peptides and MS/MS data management facilitating the design and validation of LC- MRM MS assays. The added value of the workflow is demonstrated in the development of a triplex LC-MRM MS assay used for quantification of peptides potentially associated with the progression of liver disease to hepatocellular carcinoma.

SUBMITTER: Lenco J 

PROVIDER: S-EPMC3331852 | biostudies-other | 2012 Feb

REPOSITORIES: biostudies-other

altmetric image

Publications

MS/MS library facilitated MRM quantification of native peptides prepared by denaturing ultrafiltration.

Lenco Juraj J   Lan Renny R   Edwards Nathan N   Goldman Radoslav R  

Proteome science 20120204 1


Naturally occurring native peptides provide important information about physiological states of an organism and its changes in disease conditions but protocols and methods for assessing their abundance are not well-developed. In this paper, we describe a simple procedure for the quantification of non-tryptic peptides in body fluids. The workflow includes an enrichment step followed by two-dimensional fractionation of native peptides and MS/MS data management facilitating the design and validatio  ...[more]

Similar Datasets

| S-EPMC3791740 | biostudies-literature
| S-EPMC3166647 | biostudies-literature
| S-EPMC2693437 | biostudies-literature
| S-EPMC6703902 | biostudies-literature
| S-EPMC10190159 | biostudies-literature
| S-EPMC2670839 | biostudies-other
| S-EPMC10134234 | biostudies-literature
| S-EPMC3779148 | biostudies-literature
| S-EPMC3806625 | biostudies-literature
| S-EPMC5818986 | biostudies-literature