Dataset Information

MycoRRdb: a database of computationally identified regulatory regions within intergenic sequences in mycobacterial genomes.

ABSTRACT: The identification of regulatory regions for a gene is an important step towards deciphering the gene regulation. Regulatory regions tend to be conserved under evolution that facilitates the application of comparative genomics to identify such regions. The present study is an attempt to make use of this attribute to identify regulatory regions in the Mycobacterium species followed by the development of a database, MycoRRdb. It consist the regulatory regions identified within the intergenic distances of 25 mycobacterial species. MycoRRdb allows to retrieve the identified intergenic regulatory elements in the mycobacterial genomes. In addition to the predicted motifs, it also allows user to retrieve the Reciprocal Best BLAST Hits across the mycobacterial genomes. It is a useful resource to understand the transcriptional regulatory mechanism of mycobacterial species. This database is first of its kind which specifically addresses cis-regulatory regions and also comprehensive to the mycobacterial species. Database URL: http://mycorrdb.uohbif.in.

SUBMITTER: Midha M

PROVIDER: S-EPMC3338573 | biostudies-other | 2012

REPOSITORIES: biostudies-other

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MycoRRdb: a database of computationally identified regulatory regions within intergenic sequences in mycobacterial genomes.

Midha Mohit M Prasad Nirmal K NK Vindal Vaibhav V

PloS one 20120426 4

The identification of regulatory regions for a gene is an important step towards deciphering the gene regulation. Regulatory regions tend to be conserved under evolution that facilitates the application of comparative genomics to identify such regions. The present study is an attempt to make use of this attribute to identify regulatory regions in the Mycobacterium species followed by the development of a database, MycoRRdb. It consist the regulatory regions identified within the intergenic dista ...[more]

PMID: 22563442

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Dataset Information

MycoRRdb: a database of computationally identified regulatory regions within intergenic sequences in mycobacterial genomes.

Publications

MycoRRdb: a database of computationally identified regulatory regions within intergenic sequences in mycobacterial genomes.

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