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NCBI GEO: archive for functional genomics data sets--update.

ABSTRACT: The Gene Expression Omnibus (GEO, http://www.ncbi.nlm.nih.gov/geo/) is an international public repository for high-throughput microarray and next-generation sequence functional genomic data sets submitted by the research community. The resource supports archiving of raw data, processed data and metadata which are indexed, cross-linked and searchable. All data are freely available for download in a variety of formats. GEO also provides several web-based tools and strategies to assist users to query, analyse and visualize data. This article reports current status and recent database developments, including the release of GEO2R, an R-based web application that helps users analyse GEO data.

SUBMITTER: Barrett T

PROVIDER: S-EPMC3531084 | biostudies-other | 2013 Jan

REPOSITORIES: biostudies-other

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NCBI GEO: archive for functional genomics data sets--update.

Barrett Tanya T Wilhite Stephen E SE Ledoux Pierre P Evangelista Carlos C Kim Irene F IF Tomashevsky Maxim M Marshall Kimberly A KA Phillippy Katherine H KH Sherman Patti M PM Holko Michelle M Yefanov Andrey A Lee Hyeseung H Zhang Naigong N Robertson Cynthia L CL Serova Nadezhda N Davis Sean S Soboleva Alexandra A

Nucleic acids research 20121127 Database issue

The Gene Expression Omnibus (GEO, http://www.ncbi.nlm.nih.gov/geo/) is an international public repository for high-throughput microarray and next-generation sequence functional genomic data sets submitted by the research community. The resource supports archiving of raw data, processed data and metadata which are indexed, cross-linked and searchable. All data are freely available for download in a variety of formats. GEO also provides several web-based tools and strategies to assist users to que ...[more]

PMID: 23193258

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