Milestones in software engineering and knowledge engineering history: a comparative review.
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ABSTRACT:
SUBMITTER: del Aguila IM
PROVIDER: S-EPMC3927817 | biostudies-other | 2014
REPOSITORIES: biostudies-other
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Project description:BackgroundSerious games are a support in the rehabilitation process for treating people with physical disabilities. However, many of these serious games are not adapted to the patient's needs because they are not developed with a software engineering framework with a set of activities, actions, and tasks that must be executed when creating a software product. Better serious games for rehabilitation will be developed if the patient and therapist requirements are identified, the development is planned, and system improvements and feedback are involved. The goal is that the serious game must offer a more attractive environment, while maintaining patient interest in the rehabilitation process.ObjectiveThis paper submits the results of a systematic review of serious games in physical rehabilitation identifying the benefits of using a software engineering framework.MethodsA systematic research was conducted using PubMed, PEDro (Physiotherapy Evidence Database), IEEE Xplore, ScienceDirect, ACM Digital Library, Mary Ann Liebert, Taylor & Francis Online, Wiley Online Library, and Springer databases. The initial search resulted in 701 papers. After assessing the results according to the inclusion criteria, 83 papers were selected for this study.ResultsFrom the 83 papers reviewed, 8 used a software engineering framework for its development. Most of them focused their efforts on 1 or more aspects, such as data acquisition and processing, game levels, motivation, therapist supervision.ConclusionsThis systematic review proves that most of the serious games do not use a software engineering framework for their development. As a result, development systems overlook several aspects and do not have a standardized process, eventually omitting important implementation aspects, which impact the patient's recovery time.
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Project description:BackgroundBioinformatics software is developed for collecting, analyzing, integrating, and interpreting life science datasets that are often enormous. Bioinformatics engineers often lack the software engineering skills necessary for developing robust, maintainable, reusable software. This study presents review and discussion of the findings and efforts made to improve the quality of bioinformatics software.MethodologyA systematic review was conducted of related literature that identifies core software engineering concepts for improving bioinformatics software development: requirements gathering, documentation, testing, and integration. The findings are presented with the aim of illuminating trends within the research that could lead to viable solutions to the struggles faced by bioinformatics engineers when developing scientific software.ResultsThe findings suggest that bioinformatics engineers could significantly benefit from the incorporation of software engineering principles into their development efforts. This leads to suggestion of both cultural changes within bioinformatics research communities as well as adoption of software engineering disciplines into the formal education of bioinformatics engineers. Open management of scientific bioinformatics development projects can result in improved software quality through collaboration amongst both bioinformatics engineers and software engineers.ConclusionsWhile strides have been made both in identification and solution of issues of particular import to bioinformatics software development, there is still room for improvement in terms of shifts in both the formal education of bioinformatics engineers as well as the culture and approaches of managing scientific bioinformatics research and development efforts.
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Project description:Today's computational researchers are expected to be highly proficient in using software to solve a wide range of problems ranging from processing large datasets to developing personalized treatment strategies from a growing range of options. Researchers are well versed in their own field, but may lack formal training and appropriate mentorship in software engineering principles. Two major themes not covered in most university coursework nor current literature are software testing and software optimization. Through a survey of all currently available Comprehensive R Archive Network packages, we show that reproducible and replicable software tests are frequently not available and that many packages do not appear to employ software performance and optimization tools and techniques. Through use of examples from an existing R package, we demonstrate powerful testing and optimization techniques that can improve the quality of any researcher's software.
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Project description:Over 50 years ago, visionary researchers began work on an extracorporeal artificial placenta to support premature infants. Despite rudimentary technology and incomplete understanding of fetal physiology, these pioneering scientists laid the foundation for future work. The research was episodic, as medical advances improved outcomes of premature infants and extracorporeal life support (ECLS) was introduced for the treatment of term and near-term infants with respiratory or cardiac failure. Despite ongoing medical advances, extremely premature infants continue to suffer a disproportionate burden of mortality and morbidity due to organ immaturity and unintended iatrogenic consequences of medical treatment. With advancing technology and innovative approaches, there has been a resurgence of interest in developing an artificial placenta to further diminish the mortality and morbidity of prematurity. Two related but distinct platforms have emerged to support premature infants by recreating fetal physiology: a system based on arteriovenous (AV) ECLS and one based on veno-venous (VV) ECLS. The AV-ECLS approach utilizes only the umbilical vessels for cannulation. It requires immediate transition of the infant at the time of birth to a fluid-filled artificial womb to prevent umbilical vessel spasm and avoid gas ventilation. In contradistinction, the VV-ECLS approach utilizes the umbilical vein and the internal jugular vein. It would be applied after birth to infants failing maximal medical therapy or preemptively if risk stratified for high mortality and morbidity. Animal studies are promising, demonstrating prolonged support and ongoing organ development in both systems. The milestones for clinical translation are currently being evaluated.
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Project description:For more than thirty years, it has been claimed that a way to improve software developers' productivity and software quality is to focus on people and to provide incentives to make developers satisfied and happy. This claim has rarely been verified in software engineering research, which faces an additional challenge in comparison to more traditional engineering fields: software development is an intellectual activity and is dominated by often-neglected human factors (called human aspects in software engineering research). Among the many skills required for software development, developers must possess high analytical problem-solving skills and creativity for the software construction process. According to psychology research, affective states-emotions and moods-deeply influence the cognitive processing abilities and performance of workers, including creativity and analytical problem solving. Nonetheless, little research has investigated the correlation between the affective states, creativity, and analytical problem-solving performance of programmers. This article echoes the call to employ psychological measurements in software engineering research. We report a study with 42 participants to investigate the relationship between the affective states, creativity, and analytical problem-solving skills of software developers. The results offer support for the claim that happy developers are indeed better problem solvers in terms of their analytical abilities. The following contributions are made by this study: (1) providing a better understanding of the impact of affective states on the creativity and analytical problem-solving capacities of developers, (2) introducing and validating psychological measurements, theories, and concepts of affective states, creativity, and analytical-problem-solving skills in empirical software engineering, and (3) raising the need for studying the human factors of software engineering by employing a multidisciplinary viewpoint.
| S-EPMC3961150 | biostudies-literature
Project description:The increasing complexity of data and analysis methods has created an environment where scientists, who may not have formal training, are finding themselves playing the impromptu role of software engineer. While several resources are available for introducing scientists to the basics of programming, researchers have been left with little guidance on approaches needed to advance to the next level for the development of robust, large-scale data analysis tools that are amenable to integration into workflow management systems, tools, and frameworks. The integration into such workflow systems necessitates additional requirements on computational tools, such as adherence to standard conventions for robustness, data input, output, logging, and flow control. Here we provide a set of 10 guidelines to steer the creation of command-line computational tools that are usable, reliable, extensible, and in line with standards of modern coding practices.
| S-EPMC6532757 | biostudies-literature
Project description:Today, thanks to advances in cloud computing, it is possible for small teams of software developers to produce internet-scale products, a feat that was previously the preserve of large organizations. Herein, we describe how these advances in software engineering can be made more readily available to bioinformaticians. In the same way that cloud computing has democratized access to distributed systems engineering for generalist software engineers, access to scalable and reproducible bioinformatic engineering can be democratized for generalist bioinformaticians and biologists. We present solutions, based on our own efforts, to achieve this goal.
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Project description:Background: Resilience engineering (RE) is a new approach to upgrade safety management systems. Due to its novelty in the field of safety, RE seems to be promising in providing good indicators to assess priorities in organizational strengths/weaknesses while planning to promote safety within organizations. Several methods have been recently developed to evaluate REperformance. The current study is an attempt to quantify and determine the priorities of REdimensions in a steel industry using analytic network process (ANP). Methods: In this cross-sectional study, 489 male workers of a steel industry participated. For this purpose, the RE questionnaire was distributed among workers and, then, super decisions software (version 3.2) was used to analyze the data. Results: The results indicated that there was a sufficient level of RE in the organization where top management commitment with normalized weight 0.1781 and awareness-opacity with normalized weight 0.1483 were ranked as the first and last priorities of the organization, respectively. Conclusion: The results of this study showed that the top management system, with the adoption of safety policies, has been able to improve the performance of RE in the organization. Managers should consider appropriate measures to improve the RE situation.
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Project description:Software development outsourcing is becoming more and more famous because of the advantages like cost abatement, process enhancement, and coping with the scarcity of needed resources. Studies confirm that unfortunately a large proportion of the software development outsourcing projects fails to realize anticipated benefits. Investigations into the failures of such projects divulge that in several cases software development outsourcing projects are failed because of the issues that are associated with requirements engineering process. The objective of this study is the identification and the ranking of the commonly occurring issues of the requirements engineering process in the case of software development outsourcing. For this purpose, contemporary literature has been assessed rigorously, issues faced by practitioners have been identified and three questionnaire surveys have been organized by involving experienced software development outsourcing practitioners. The Delphi technique, cut-off value method and 50% rule have also been employed. The study explores 150 issues (129 issues from literature and 21 from industry) of requirements engineering process for software development outsourcing, groups the 150 issues into 7 identified categories and then extricates 43 customarily or commonly arising issues from the 150 issues. Founded on 'frequency of occurrence' the 43 customarily arising issues have been ranked with respect to respective categories (category-wise ranking) and with respect to all the categories (overall ranking). Categories of the customarily arising issues have also been ranked. The issues' identification and ranking contribute to design proactive software project management plan for dealing with software development outsourcing failures and attaining conjectured benefits of the software development outsourcing.
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Project description:This research paper answers the question that how shall the students of software engineering undergraduate courses form teams for the capstone projects that can be cohesive too. In this research, 128 criteria for team formation are proposed for building teams for self-managing software engineering capstone projects. A comparison is also conducted to ascertain the level of cohesion among those teams that were formed using the proposed criteria and those that were not formed using the proposed criteria. The criteria were identified through a combination of qualitative questionnaire survey targeted at the graduated students of the past batches of Computer Science degree program and through synthesizing the literature on engineering capstone project teams identified under the guidance of KSAO framework for software engineering students. To check the effectiveness of the criteria, 100 students were asked to form the teams using the proposed criteria and other 100 students formed the teams without the proposed criteria. Those students that had used the proposed criteria for building teams and those that had formed teams without using the proposed criteria were asked to fill the modified Group Environment Questionnaire to ascertain the level of cohesion among the team members. The results were analyzed qualitatively and through descriptive quantification. The results show that the level of cohesion in teams that were formed using the proposed team building criteria was higher. There was a need for team building criteria in the literature on software engineering capstone project teams that conforms to a conceptual, theoretical framework; this gap is now filled through this research. This paper may also serve as a literature review paper for some readers.
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