Performance of different herbicides in dry-seeded rice in Bangladesh.
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ABSTRACT:
SUBMITTER: Ahmed S
PROVIDER: S-EPMC3933028 | biostudies-other | 2014
REPOSITORIES: biostudies-other
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Project description:Plant hormones influence various physiological processes during the growth and development of plants, but their critical roles in influencing yield and antioxidant activities in dry-seeded rice (DSR) have not been adequately explored. This study aims to analyze the performance and antioxidant activity of contrasting genotypes of DSR in response to soil moisture regimes and foliar-applied hormones. The study comprised sixteen treatments that were evaluated under field conditions as per split-plot design in three replications. Treatments comprised combinations of two soil moisture tension regimes (10 kPa and 20 kPa) and two genotypes (PR-111, non-stay-green type and PR-123, stay-green type) applied to the main plots and foliar application of three hormones (gibberellic acid (GA3) 40 mg kg-1, abscisic acid (ABA) 20 mg kg-1, and cytokinin (CK) 40 mg kg-1)) and a control (unsprayed) to subplots. The non-stay-green genotype (PR-111) resulted in 34.6% more grain yield (6.48 t ha-1) than the stay-green genotype (PR-123) at the lower soil moisture tension regime (SMTR) (10 kPa) due to the increased number of filled grains per panicle and improvement in harvest index (HI). At the higher SMTR (20 kPa), the stay-green genotype (PR-123) produced 26.4% more grain yield (5.21 t ha-1) than non-stay green genotype (4.12 t ha-1) and showed enhanced superoxide dismutase (SOD) and peroxide dismutase (POD) activity that may have contributed in maintaining sink size through improved chlorophyll content. Grain yield (6.35 t ha-1) with foliar-applied GA3 (40 mg kg-1) at SMTR of 10 kPa was higher by 12.2% and 24.0% than with foliar-applied ABA (20 mg kg-1) and unsprayed treatments, respectively. Irrigation application at SMTR of 20 kPa and foliar application of ABA gave 24.1% higher grain yield (5.15 t ha-1) than the unsprayed treatment, but it was similar to foliar-applied GA3 and CK. This study implied that the stay-green genotype (PR-123) was more suitable under moisture stress conditions (20 kPa) in DSR, as it maintained sink size even under moisture stress conditions by improving dry matter translocation and enhancing SOD and POD activity. The study suggests the need to find out the endogenous level of these plant hormones in rice genotypes under a range of water regimes to develop high yielding and water use efficient genotypes of DSR.
| S-EPMC7238010 | biostudies-literature
Project description:The differential weed-competitive abilities of eight rice genotypes and the traits that may confer such attributes were investigated under partial weedy and weed-free conditions in naturally occurring weed flora in dry direct-seeded rice during the rainy seasons of 2011 and 2012 at Ludhiana, Punjab, India. The results showed genotypic differences in competitiveness against weeds. In weed-free plots, grain yield varied from 6.6 to 8.9 t ha(-1) across different genotypes; it was lowest for PR-115 and highest for the hybrid H-97158. In partial weedy plots, grain yield and weed biomass at flowering varied from 3.6 to 6.7 t ha(-1) and from 174 to 419 g m(-2), respectively. In partial weedy plots, grain yield was lowest for PR-115 and highest for PR-120. Average yield loss due to weed competition ranged from 21 to 46% in different rice genotypes. The study showed that early canopy closure, high leaf area index at early stage, and high root biomass and volume correlated positively with competitiveness. This study suggests that some traits (root biomass, leaf area index, and shoot biomass at the early stage) could play an important role in conferring weed competitiveness and these traits can be explored for dry-seeded rice.
| S-EPMC4100294 | biostudies-other
Project description:The development of rice varieties for dry direct-seeded conditions can be accelerated by selecting suitable traits. In the present investigation, traits hypothesized to be important for direct-seeded conditions in rainfed systems, including seedling emergence, early vegetative vigour, nutrient uptake, nodal root number, and root hair length and density, were characterized to study the genetic control of these traits and their relationship with grain yield under seedling- and reproductive-stage drought stress. Two BC?F? mapping populations derived from crosses of Aus276, a drought-tolerant aus variety, with MTU1010 and IR64, high-yielding indica mega-varieties, were developed and studied to identify quantitative trait loci (QTLs) that showed large and consistent effects. A total of 26 QTLs associated with 23 traits and 20 QTLs associated with 13 traits were mapped in the Aus276/3*IR64 and Aus276/3*MTU1010 populations, respectively. qGY?.?, qGY??.?, qGY?.?, and qEVV?.? were found to be effective in both populations under a wide range of conditions. QTLs for several seedling-stage traits co-located with QTLs for grain yield, including early vegetative vigour and root hair length. On chromosome 5, several QTLs for nutrient uptake co-located with QTLs for root hair density and nematode gall rating. Six lines were selected from both populations based on grain yield and the presence of QTLs, and these lines typically showed improved seedling-stage traits (nodal root number, dry shoot weight, and root hair length and density). The co-located QTLs identified here can be used in research aimed at increasing the yield and adaptability of rainfed rice to direct-seeded conditions.
| S-EPMC4265160 | biostudies-literature
Project description:Dry direct-seeded rice (DSR) is an alternative crop establishment method with less water and labor requirement through mechanization. It provides better opportunities for a second crop during the cropping season and therefore, a feasible alternative system to transplanted lowland rice. However, lodging is one of the major constraints in attaining high yield in DSR. Identification of QTLs for lodging resistance and their subsequent use in improving varieties under DSR will be an efficient breeding strategy to address the problem. In order to map the QTLs associated with lodging resistance, a set of 253 BC3F4 lines derived from a backcross between Swarna and Moroberekan were evaluated in two consecutive years. A total of 12 QTLs associated with lodging resistance traits [culm length (qCL), culm diameter (qCD), and culm strength (qCS)] were mapped on chromosomes 1, 2, 6, and 7 using 193 polymorphic SNP markers. Two major and consistent effect QTLs, namely qCD1.1 (with R2 of 10%) and qCS1.1 (with R2 of 14%) on chromosome 1 with id1003559 being the peak SNP marker (flanking markers; id1001973-id1006772) were identified as a common genomic region associated with important lodging resistance traits. In silico analysis revealed the presence of Gibberellic Acid 3 beta-hydroxylase along with 34 other putative candidate genes in the marker interval region of id1001973-id1006772. The positive alleles for culm length, culm diameter, and culm strength were contributed by the upland adaptive parent Moroberekan. Our results identified significant positive correlation between lodging related traits (culm length diameter and strength) and grain yield under DSR, indicating the role of lodging resistant traits in grain yield improvement under DSR. Deployment of the identified alleles influencing the culm strength and culm diameter in marker assisted introgression program may facilitate the lodging resistance under DSR.
| S-EPMC5567065 | biostudies-literature
Project description:BACKGROUND:Puddled transplanted system of rice cultivation despite having several benefits, is a highly labor, water and energy intensive system. In the face of changing climatic conditions, a successful transition from puddled to dry direct seeded rice (DDSR) cultivation system looks must in future. Genome-wide association study was performed for traits including, roots and nutrient uptake (14 traits), plant-morphological (5 traits), lodging-resistance (4 traits) and yield and yield attributing traits (7 traits) with the aim to identify significant marker-trait associations (MTAs) for traits enhancing rice adaptability to dry direct-seeded rice (DDSR) system. RESULTS:Study identified a total of 37 highly significant MTAs for 20 traits. The false discovery rate (FDR) ranged from 0.264 to 3.69 × 10- 4, 0.0330 to 1.25 × 10- 4, and 0.0534 to 4.60 × 10- 6 in 2015WS, 2016DS and combined analysis, respectively. The percent phenotypic variance (PV) explained by SNPs ranged from 9 to 92%. Among the identified significant MTAs, 15 MTAs associated with the traits including nodal root, root hair length, root length density, stem and culm diameter, plant height and grain yield were reported to be located in the proximity of earlier identified candidate gene. The significant positive correlation of grain-yield with seedling establishment traits, root morphological and nutrient-uptake related traits and grain yield attributing traits pointing towards combining target traits to increase rice yield and adaptability under DDSR. Seven promising progenies with better root morphology, nutrient-uptake and higher grain yield were identified that can further be used in genomics assisted breeding for DDSR varietal development. CONCLUSIONS:Once validated, the identified MTAs and the SNPs linked with trait of interest could be of direct use in genomic assisted breeding (GAB) to improve grain yield and adaptability of rice under DDSR.
| S-EPMC6558851 | biostudies-other
Project description:Strong seedling vigor is desirable trait in dry direct-seeded rice (DSR) for enhancing crop establishment and the ability to compete against weeds. A set of 253 BC3F4 lines derived from cross between Swarna and Moroberekan was phenotyped for early vigor (EV) and 8 related traits viz., early uniform emergence (EUE), shoot length (SHL), stem length (SL), shoot fresh weight (SFW), total fresh weight (TFW), shoot dry weight (SDW), total dry weight (TDW), and root dry weight (RDW). Composite interval mapping analysis using genotypic data from 194 SNP markers identified six genomic regions associated with traits on chromosomes 3, 4, 5, and 6 with phenotypic variance ranging from 2.5 to 18.6%. Among them 2 QTL regions; one on chr3 (id3001701-id300833) and the other on chr5 (wd5002636-id5001470) were identified as QTL hotspots A and B respectively and expressed consistently in field as well as glasshouse condition. The majority of QTLs identified for early vigor, and related traits were clustered in the QTL hotspots A (qEV3.1, qEUE3.1, qSHL3.1, qSL3.1, qSFW3.1, qTFW3.1, qRDW3.1 ) and QTL hotspot B (qEV5.1, qEUE5.1, qSHL5.1, qSL5.1, qSFW5.1, qSDW5.1, qTDW5.1 ). Ten putative candidate genes viz., 1-alpha-amylase precursor, 2-glutamate decarboxylase, 1-ethylene-insensitive 3, 3-expansin precursor, and 3-phenylalanine ammonia-lyase associated with the target traits were identified in the selected QTL regions. Mutations were identified in the coding region of alpha-amylase precursor and ethylene-insensitive 3 gene between the parents which can be utilized in marker assisted breeding. Trait relationships among the agro-physiological traits were examined to select the best genotypes for the given traits for use in future breeding programs.
| S-EPMC5332406 | biostudies-literature
Project description:With the changing climatic conditions and reducing labor-water availability, the potential contribution of aerobic rice varieties and cultivation system to develop a sustainable rice based agri-food system has never been more important than today. Keeping in mind the goal of identifying high-yielding aerobic rice varieties for wider adaptation, a set of aerobic rice breeding lines were developed and evaluated for grain yield, plant height, and days to 50% flowering in 23 experiments conducted across different location in Philippines, India, Bangladesh, Nepal, and Lao-PDR between 2014 and 2017 in both wet and dry seasons. The heritability for grain yield ranged from 0.52 to 0.90. The season-wise two-stage analysis indicated significant genotype x location interaction for yield under aerobic conditions in both wet and dry seasons. The genotype × season × location interaction for yield was non-significant in both seasons indicating that across seasons the genotypes at each location did not show variability in the grain yield performance. Mean grain yield of the studied genotypes across different locations/seasons ranged from 2,085 to 6,433 Kg ha-1. The best-fit model for yield stability with low AIC value (542.6) was AMMI(1) model. The identified stable genotypes; IR 92521-143-2-2-1, IR 97048-10-1-1-3, IR 91326-7-13-1-1, IR 91326-20-2-1-4, and IR 91328-43-6-2-1 may serve as novel breeding material for varietal development under aerobic system of rice cultivation. High yield and stable performance of promising breeding lines may be due to presence of the earlier identified QTLs including grain yield under drought, grain yield under aerobic conditions, nutrient uptake, anaerobic germination, adaptability under direct seeded conditions, and tolerance to biotic stress resistance such as qDTY 2.1 , qDTY 3.1 , qDTY 12.1 , qNR 5.1 , AG 9.1 , qEVV 9.1 , qRHD 1.1 , qRHD 5.1, qRHD 8.1 qEMM 1.1 , qGY 6.1 , BPH3, BPH17, GM4, xa4, Xa21, Pita, and Pita2. The frequency of xa4 gene was highest followed by qAG 9.1, GM4, qDTY 3.1 , qDTY 2.1 , qGY 6.1, and qDTY 12.1.
| S-EPMC6384261 | biostudies-literature
Project description:In the face of global water scarcity, a successful transition of rice cultivation from puddled to dry direct-seeded rice (DDSR) is a future need. A genome-wide association study was performed on a complex mapping population for 39 traits: 9 seedling-establishment traits, 14 root and nutrient-uptake traits, 5 plant morphological traits, 4 lodging resistance traits, and 7 yield and yield-contributing traits. A total of 10 significant marker-trait associations (MTAs) were found along with 25 QTLs associated with 25 traits. The percent phenotypic variance explained by SNPs ranged from 8% to 84%. Grain yield was found to be significantly and positively correlated with seedling-establishment traits, root morphological traits, nutrient uptake-related traits, and grain yield-contributing traits. The genomic colocation of different root morphological traits, nutrient uptake-related traits, and grain-yield-contributing traits further supports the role of root morphological traits in improving nutrient uptake and grain yield under DDSR. The QTLs/candidate genes underlying the significant MTAs were identified. The identified promising progenies carrying these QTLs may serve as potential donors to be exploited in genomics-assisted breeding programs for improving grain yield and adaptability under DDSR.
| S-EPMC6597570 | biostudies-literature
Project description:The underground reserve (root) has been an uncharted research territory with its untapped genetic variation yet to be exploited. Identifying ideal traits and breeding new rice varieties with efficient root system architecture (RSA) has great potential to increase resource-use efficiency and grain yield, especially under direct-seeded rice, by adapting to aerobic soil conditions. In this review, we tried to mine the available research information on the direct-seeded rice (DSR) root system to highlight the requirements of different root traits such as root architecture, length, number, density, thickness, diameter, and angle that play a pivotal role in determining the uptake of nutrients and moisture at different stages of plant growth. RSA also faces several stresses, due to excess or deficiency of moisture and nutrients, low or high temperature, or saline conditions. To counteract these hindrances, adaptation in response to stress becomes essential. Candidate genes such as early root growth enhancer PSTOL1, surface rooting QTL qSOR1, deep rooting gene DRO1, and numerous transporters for their respective nutrients and stress-responsive factors have been identified and validated under different circumstances. Identifying the desired QTLs and transporters underlying these traits and then designing an ideal root architecture can help in developing a suitable DSR cultivar and aid in further advancement in this direction.
| S-EPMC8199995 | biostudies-literature
Project description:Poor crop establishment, high weed infestation, and consequent yield loss are major concerns for dry-seeded rice (DSR). Flooding after seeding helps in managing weeds but reduces seed germination and crop stand. Anaerobic germination (AG)-tolerant rice genotypes could overcome these problems in DSR. Screenhouse experiments were established to evaluate the effect of seed sowing depth (SD) (0.5 cm, 1 cm, and 2 cm) and flooding depth (FD) (saturated, 2 cm, and 5 cm) on crop establishment, early growth, and weed competitiveness in DSR using AG-tolerant genotypes (Khao Hlan On, Ma-Zhan Red, IR64+AG1, and IR64). Echinochloa crus-galli, Ludwigia hyssopifolia, and Cyperus difformis were used in the weedy treatment. Rice plants reached maximum emergence 9-13 days later under flooding compared with saturated conditions. Crop emergence decreased by 12-22% at 0.5 and 1 cm SD and by 48-60% at 2 cm SD, when combined with 2 or 5 cm FD compared with saturated conditions. The 2 cm SD reduced seedling emergence by 23-42% in Khao Hlan On and Ma-Zhan Red, by 62-70% in IR64+AG1, and by 90-92% in IR64 under flooding. Initial growth in rice plant height was slow under flooding but increased progressively after the seedlings emerged from water and the final height was not affected by FD. Leaf area, total shoot biomass, tiller density, and leaf number per pot of rice were higher at 1 cm SD (P< 0.05), but decreased drastically at 2 cm SD under flooding. The emergence of E. crus-galli and L. hyssopifolia decreased by 53-65% and 89-95%, respectively, but increased by 49-68% in C. difformis under 2 and 5 cm FD, respectively, compared with saturated conditions. The shoot biomass of the weeds followed the same trend. Khao Hlan On showed the highest weed-competitive ability under all FD while the biomass of IR64+AG1 and IR64 decreased by 10-14% due to weed competition under 2 cm FD. The 1 cm SD showed better growth for all genotypes under different FD. The 2 cm FD is sufficient to have a significant control of problematic weed species. The tolerance of AG of rice genotypes should be further enhanced to increase their weed-competitive ability.
| S-EPMC6265439 | biostudies-literature