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BridgeDb app: unifying identifier mapping services for Cytoscape.

ABSTRACT: The BridgeDb app for Cytoscape allows users to map and annotate identifiers of genes, proteins and metabolites in the context of biological networks. The app greatly simplifies the identifier mapping process in Cytoscape by providing a unified interface to different mapping resources and services. The app also provides a programming interface via Cytoscape Commands that can be utilized for identifier mapping by other Cytoscape apps. In this article we provide a technical guide to the BridgeDb app for mapping identifiers in Cytoscape.

SUBMITTER: Gao J 

PROVIDER: S-EPMC4111116 | biostudies-other | 2014

REPOSITORIES: biostudies-other

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BridgeDb app: unifying identifier mapping services for Cytoscape.

Gao Jianjiong J   Zhang Chao C   van Iersel Martijn M   Zhang Li L   Xu Dong D   Schultz Nikolaus N   R Pico Alexander A  

F1000Research 20140701

The BridgeDb app for Cytoscape allows users to map and annotate identifiers of genes, proteins and metabolites in the context of biological networks. The app greatly simplifies the identifier mapping process in Cytoscape by providing a unified interface to different mapping resources and services. The app also provides a programming interface via Cytoscape Commands that can be utilized for identifier mapping by other Cytoscape apps. In this article we provide a technical guide to the BridgeDb ap  ...[more]