QuasR: quantification and annotation of short reads in R.
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ABSTRACT:
SUBMITTER: Gaidatzis D
PROVIDER: S-EPMC4382904 | biostudies-other | 2015 Apr
REPOSITORIES: biostudies-other
Publications
QuasR: quantification and annotation of short reads in R.
Gaidatzis Dimos D Lerch Anita A Hahne Florian F Stadler Michael B MB
Bioinformatics (Oxford, England) 20141121 7
<h4>Unlabelled</h4>QuasR is a package for the integrated analysis of high-throughput sequencing data in R, covering all steps from read preprocessing, alignment and quality control to quantification. QuasR supports different experiment types (including RNA-seq, ChIP-seq and Bis-seq) and analysis variants (e.g. paired-end, stranded, spliced and allele-specific), and is integrated in Bioconductor so that its output can be directly processed for statistical analysis and visualization.<h4>Availabili ...[more]
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