Dataset Information

Uncovering miRNAs involved in crosstalk between nutrient deficiencies in Arabidopsis.

ABSTRACT: Integrating carbon (C), nitrogen (N), and sulfur (S) metabolism is essential for the growth and development of living organisms. MicroRNAs (miRNAs) play key roles in regulating nutrient metabolism in plants. However, how plant miRNAs mediate crosstalk between different nutrient metabolic pathways is unclear. In this study, deep sequencing of Arabidopsis thaliana small RNAs was used to reveal miRNAs that were differentially expressed in response to C, N, or S deficiency. Comparative analysis revealed that the targets of the differentially expressed miRNAs are involved in different cellular responses and metabolic processes, including transcriptional regulation, auxin signal transduction, nutrient homeostasis, and regulation of development. C, N, and S deficiency specifically induced miR169b/c, miR826 and miR395, respectively. In contrast, miR167, miR172, miR397, miR398, miR399, miR408, miR775, miR827, miR841, miR857, and miR2111 are commonly suppressed by C, N, and S deficiency. In particular, the miRNAs that are induced specifically by a certain nutrient deficiency are often suppressed by other nutrient deficiencies. Further investigation indicated that the modulation of nutrient-responsive miRNA abundance affects the adaptation of plants to nutrient starvation conditions. This study revealed that miRNAs function as important regulatory nodes of different nutrient metabolic pathways.

SUBMITTER: Liang G

PROVIDER: S-EPMC4488870 | biostudies-other | 2015

REPOSITORIES: biostudies-other

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Uncovering miRNAs involved in crosstalk between nutrient deficiencies in Arabidopsis.

Liang Gang G Ai Qin Q Yu Diqiu D

Scientific reports 20150702

Integrating carbon (C), nitrogen (N), and sulfur (S) metabolism is essential for the growth and development of living organisms. MicroRNAs (miRNAs) play key roles in regulating nutrient metabolism in plants. However, how plant miRNAs mediate crosstalk between different nutrient metabolic pathways is unclear. In this study, deep sequencing of Arabidopsis thaliana small RNAs was used to reveal miRNAs that were differentially expressed in response to C, N, or S deficiency. Comparative analysis reve ...[more]

PMID: 26134148

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Project description:It is common in hydroponics to supply nutrients to crops by maintaining electrical conductivity (EC) of the recycling solution at a target level. Levels of individual nutrients in the solution are generally not assessed as their regular measurement and adjustment can be both expensive and technically challenging. However, the approach of growing crops at a target EC can potentially result in nutrient imbalances in the solution and reduced growth. We quantified the effects of recycling on solution EC changes, tissue nutrient concentration, canopy growth rate, plant water status, and shoot and root weight of lettuce (Lactuca sativa) in a greenhouse. The tap water quality was moderately alkaline and similar to that commonly observed in many commercial greenhouses. In our research, recycling solution maintained at a target EC (1.8 dS⋅m-1) significantly reduced shoot fresh (22-36%) and dry weight compared to the control supplied regularly with freshly prepared solution at the target EC. Further, recycling significantly decreased N, P, K, and Fe and increased Na and Cu levels in the tissue, in addition to increasing solution EC between adjustments compared to the control. Using image analysis of groups of plants, we identified that the negative effects of recycling on canopy area started 2 weeks after transplanting. Based on these results, we hypothesized that certain unwanted compounds (e.g., bicarbonates) and slowly consumed elements (e.g., Ca, Mg) were added to the recycling solution through the alkaline tap water with time. Their accumulation "artificially" increased solution EC and "masked" the lower than optimal levels of major nutrients in the solution, leading to the reductions in the concentration of nutrients in the tissue and plant growth. Supporting this, the negative effects of recycling were not observed when the recycling solution was either discarded after 2 weeks of use or made using reverse osmosis water and continuously used. Our findings aid in proper management of recycling solution in hydroponic lettuce production.

Dataset Information

Uncovering miRNAs involved in crosstalk between nutrient deficiencies in Arabidopsis.

Publications

Uncovering miRNAs involved in crosstalk between nutrient deficiencies in Arabidopsis.

Similar Datasets

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