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TFmiR: a web server for constructing and analyzing disease-specific transcription factor and miRNA co-regulatory networks.


ABSTRACT: TFmiR is a freely available web server for deep and integrative analysis of combinatorial regulatory interactions between transcription factors, microRNAs and target genes that are involved in disease pathogenesis. Since the inner workings of cells rely on the correct functioning of an enormously complex system of activating and repressing interactions that can be perturbed in many ways, TFmiR helps to better elucidate cellular mechanisms at the molecular level from a network perspective. The provided topological and functional analyses promote TFmiR as a reliable systems biology tool for researchers across the life science communities. TFmiR web server is accessible through the following URL: http://service.bioinformatik.uni-saarland.de/tfmir.

SUBMITTER: Hamed M 

PROVIDER: S-EPMC4489273 | biostudies-other | 2015 Jul

REPOSITORIES: biostudies-other

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TFmiR: a web server for constructing and analyzing disease-specific transcription factor and miRNA co-regulatory networks.

Hamed Mohamed M   Spaniol Christian C   Nazarieh Maryam M   Helms Volkhard V  

Nucleic acids research 20150505 W1


TFmiR is a freely available web server for deep and integrative analysis of combinatorial regulatory interactions between transcription factors, microRNAs and target genes that are involved in disease pathogenesis. Since the inner workings of cells rely on the correct functioning of an enormously complex system of activating and repressing interactions that can be perturbed in many ways, TFmiR helps to better elucidate cellular mechanisms at the molecular level from a network perspective. The pr  ...[more]

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