Linking fecal bacteria in rivers to landscape, geochemical, and hydrologic factors and sources at the basin scale.
Ontology highlight
ABSTRACT:
SUBMITTER: Verhougstraete MP
PROVIDER: S-EPMC4547304 | biostudies-other | 2015 Aug
REPOSITORIES: biostudies-other
Similar Datasets
Project description:Background and aimsCoastal wetlands have evolved to withstand stressful abiotic conditions through the maintenance of hydrologic feedbacks between vegetation production and flooding. However, disruption of these feedbacks can lead to ecosystem collapse, or a regime shift from vegetated wetland to open water. To prevent the loss of critical coastal wetland habitat, we must improve understanding of the abiotic-biotic linkages among flooding and wetland stability. The aim of this research was to identify characteristic landscape patterns and thresholds of wetland degradation that can be used to identify areas of vulnerability, reduce flooding threats and improve habitat quality.MethodsWe measured local- and landscape-scale responses of coastal wetland vegetation to flooding stress in healthy and degrading coastal wetlands. We hypothesized that conversion of Spartina patens wetlands to open water could be defined by a distinct change in landscape configuration pattern, and that this change would occur at a discrete elevation threshold.Key resultsDespite similarities in total land and water cover, we observed differences in the landscape configuration of vegetated and open water pixels in healthy and degrading wetlands. Healthy wetlands were more aggregated, and degrading wetlands were more fragmented. Generally, greater aggregation was associated with higher wetland elevation and better drainage, compared with fragmented wetlands, which had lower elevation and poor drainage. The relationship between vegetation cover and elevation was non-linear, and the conversion from vegetated wetland to open water occurred beyond an elevation threshold of hydrologic stress.ConclusionsThe elevation threshold defined a transition zone where healthy, aggregated, wetland converted to a degrading, fragmented, wetland beyond an elevation threshold of 0.09 m [1988 North American Vertical Datum (NAVD88)] [0.27 m mean sea level (MSL)], and complete conversion to open water occurred beyond 0.03 m NAVD88 (0.21 m MSL). This work illustrates that changes in landscape configuration can be used as an indicator of wetland loss. Furthermore, in conjunction with specific elevation thresholds, these data can inform restoration and conservation planning to maximize wetland stability in anticipation of flooding threats.
| S-EPMC7442328 | biostudies-literature
Project description:Previous studies of microbial communities in subseafloor sediments reported that microbial abundance and diversity decrease with sediment depth and age, and microbes dominating at depth tend to be a subset of the local seafloor community. However, the existence of geographically widespread, subsurface-adapted specialists is also possible. Here, we use metagenomic and metatranscriptomic analyses of the hydrothermally heated, sediment layers of Guaymas Basin (Gulf of California, Mexico) to examine the distribution and activity patterns of bacteria and archaea along thermal, geochemical and cell count gradients. We find that the composition and distribution of metagenome-assembled genomes (MAGs), dominated by numerous lineages of Chloroflexota and Thermoproteota, correlate with biogeochemical parameters as long as temperatures remain moderate, but downcore increasing temperatures beyond ca. 45 ºC override other factors. Consistently, MAG size and diversity decrease with increasing temperature, indicating a downcore winnowing of the subsurface biosphere. By contrast, specific archaeal MAGs within the Thermoproteota and Hadarchaeota increase in relative abundance and in recruitment of transcriptome reads towards deeper, hotter sediments, marking the transition towards a specialized deep, hot biosphere.
| S-EPMC10681998 | biostudies-literature
Project description:Carbon (C) and silicon (Si) biogeochemical cycles are important factors in the regulation of atmospheric CO2 concentrations and hence climate change. Theoretically, these elements are linked by chemical weathering and organism stoichiometry, but this coupling has not been investigated in freshwaters. Here we compiled data from global rivers and lakes in the United States of America and the United Kingdom, in order to characterize the stoichiometry between the biogeochemical cycles of C and Si. In rivers this coupling is confirmed by a significant relationship between HCO3-/Na+ and DSi/Na+, and DSi:HCO3- ratio can reflect the mineral source of chemical weathering. In lakes, however, these characteristic ratios of chemical weathering are altered by algal activity. The lacustrine Si:C atomic ratio is negative feedback regulation by phytoplankton, which may result in this ratio in algal assemblages similar to that in water column. And this regulation suggests lacustrine photosynthetic C fixation in this equilibrium state is quantitative and depends on the DSi concentration. These findings provide new insights into the role of freshwaters in global C and Si biogeochemical cycles.
| S-EPMC5075770 | biostudies-literature
Project description:Surface water storage in small yet abundant landscape depressions-including wetlands and other small waterbodies-is largely disregarded in conventional hydrologic modeling practices. No quantitative evidence exists of how their exclusion may lead to potentially inaccurate model projections and understanding of hydrologic dynamics across the world's major river basins. To fill this knowledge gap, we developed the first-ever major river basin-scale modeling approach integrating surface depressions and focusing on the 450,000-km2 Upper Mississippi River Basin (UMRB) in the United States. We applied a novel topography-based algorithm to estimate areas and volumes of ~455,000 surface depressions (>1 ha) across the UMRB (in addition to lakes and reservoirs) and subsequently aggregated their effects per subbasin. Compared to a "no depression" conventional model, our depression-integrated model (a) improved streamflow simulation accuracy with increasing upstream abundance of depression storage, (b) significantly altered the spatial patterns and magnitudes of water yields across 315,000 km2 (70%) of the basin area, and (c) provided realistic spatial distributions of rootzone wetness conditions corresponding to satellite-based data. Results further suggest that storage capacity (i.e., volume) alone does not fully explain depressions' cumulative effects on landscape hydrologic responses. Local (i.e., subbasin level) climatic and geophysical drivers and downstream flowpath-regulating structures (e.g., reservoirs and dams) influence the extent to which depression storage volume in a subbasin causes hydrologic effects. With these new insights, our study supports the integration of surface depression storage and thereby catalyzes a reassessment of current hydrological modeling and management practices for basin-scale studies.
| S-EPMC7751708 | biostudies-literature
Project description:Patterns of migration and habitat use in diadromous fishes can be highly variable among individuals. Most investigations into diadromous movement patterns have been restricted to populations in regulated rivers, and little information exists for those in unregulated catchments. We quantified movements of migratory barramundi Lates calcarifer (Bloch) in two large unregulated rivers in northern Australia using both elemental (Sr/Ba) and isotope ((87)Sr/(86)Sr) ratios in aragonitic ear stones, or otoliths. Chemical life history profiles indicated significant individual variation in habitat use, particularly among chemically distinct freshwater habitats within a catchment. A global zoning algorithm was used to quantify distinct changes in chemical signatures across profiles. This algorithm identified between 2 and 6 distinct chemical habitats in individual profiles, indicating variable movement among habitats. Profiles of (87)Sr/(86)Sr ratios were notably distinct among individuals, with highly radiogenic values recorded in some otoliths. This variation suggested that fish made full use of habitats across the entire catchment basin. Our results show that unrestricted movement among freshwater habitats is an important component of diadromous life histories for populations in unregulated systems.
| S-EPMC3071836 | biostudies-literature
Project description:Landscape classification and hydrological regionalisation studies are being increasingly used in ecohydrology to aid in the management and research of aquatic resources. We present a methodology for classifying hydrologic landscapes based on spatial environmental variables by employing non-parametric statistics and hybrid image classification. Our approach differed from previous classifications which have required the use of an a priori spatial unit (e.g. a catchment) which necessarily results in the loss of variability that is known to exist within those units. The use of a simple statistical approach to identify an appropriate number of classes eliminated the need for large amounts of post-hoc testing with different number of groups, or the selection and justification of an arbitrary number. Using statistical clustering, we identified 23 distinct groups within our training dataset. The use of a hybrid classification employing random forests extended this statistical clustering to an area of approximately 228,000 km2 of south-eastern Australia without the need to rely on catchments, landscape units or stream sections. This extension resulted in a highly accurate regionalisation at both 30-m and 2.5-km resolution, and a less-accurate 10-km classification that would be more appropriate for use at a continental scale. A smaller case study, of an area covering 27,000 km2, demonstrated that the method preserved the intra- and inter-catchment variability that is known to exist in local hydrology, based on previous research. Preliminary analysis linking the regionalisation to streamflow indices is promising suggesting that the method could be used to predict streamflow behaviour in ungauged catchments. Our work therefore simplifies current classification frameworks that are becoming more popular in ecohydrology, while better retaining small-scale variability in hydrology, thus enabling future attempts to explain and visualise broad-scale hydrologic trends at the scale of catchments and continents.
| S-EPMC4232575 | biostudies-literature
Project description:Study regionThe Kamish River catchment (308 km2); a mountainous agricultural catchment under dry-land and rangeland farming located in Kermanshah province, in western Iran.Study focusThe main objective of this study was to apportion sub-basin spatial source relative contributions to target channel bed sediment samples using a composite fingerprinting procedure including a Bayesian un-mixing model. In total, thirty-four geochemical tracers, eleven elemental ratios and different weathering indices were measured or estimated for 43 tributary sediment samples collected to characterise three sub-basin spatial sediment sources and eleven target bed sediment samples collected at the outlet of the main basin. Statistical analysis was used to select three different composite signatures.New hydrological insights for the regionUsing a composite signature based on KW-H and DFA, the respective relative contributions (with uncertainty ranges) from tributary sub-basins 1, 2 and 3 were estimated as 54.3% (47.8-62.0), 11.4% (4.2-18.7) and 34.3% (27.6-39.9), compared to 72.0% (61.6-82.7), 13.6% (9.0-18.5) and 14.2% (3.1-25.4) using a combination of KW-H and data mining, and 50.8% (42.8-59.9), 28.7% (20.2-37.3) and 20.3% (12.7-27.2) using a fingerprint selected by KW-H and PCCA. The root mean square difference between these source estimates highlighted sensitivity to the composite signatures. Evaluation of the un-mixing model predictions using virtual mixture tests confirmed agreement between modelled and known source proportions.
| S-EPMC6686636 | biostudies-literature
Project description:Identifying land-use drivers of changes in river condition is complicated by spatial scale, geomorphological context, land management, and correlations among responding variables such as nutrients and sediments. Furthermore, variations in standard metrics, such as substratum composition, do not necessarily relate causally to ecological impacts. Consequently, the absence of a significant relationship between a hypothesised driver and a dependent variable does not necessarily indicate the absence of a causal relationship. We conducted a gradient survey to identify impacts of catchment-scale grazing by domestic livestock on river macroinvertebrate communities. A standard correlative approach showed that community structure was strongly related to the upstream catchment area under grazing. We then used data from a stream mesocosm experiment that independently quantified the impacts of nutrients and fine sediments on macroinvertebrate communities to train artificial neural networks (ANNs) to assess the relative influence of nutrients and fine sediments on the survey sites from their community composition. The ANNs developed to predict nutrient impacts did not find a relationship between nutrients and catchment area under grazing, suggesting that nutrients were not an important factor mediating grazing impacts on community composition, or that these ANNs had no generality or insufficient power at the landscape-scale. In contrast, ANNs trained to predict the impacts of fine sediments indicated a significant relationship between fine sediments and catchment area under grazing. Macroinvertebrate communities at sites with a high proportion of land under grazing were thus more similar to those resulting from high fine sediments in a mesocosm experiment than to those resulting from high nutrients. Our study confirms that 1) fine sediment is an important mediator of land-use impacts on river macroinvertebrate communities, 2) ANNs can successfully identify subtle effects and separate the effects of correlated variables, and 3) data from small-scale experiments can generate relationships that help explain landscape-scale patterns.
| S-EPMC4361191 | biostudies-literature
Project description:Climate change and anthropogenic activities pose serious threats to river basin hydrology worldwide. The Ganga basin is home to around half a billion people and has been significantly impacted by hydrological alterations in the last few decades. The increasing high-intensity rainfall events often create flash flooding events. Such events are frequently reported in mountainous and alluvial plains of the Ganga basin, putting the entire basin under severe flood risk. Further, increasing human interventions through hydraulic structures in the upstream reaches significantly alter the flows during the pre-and post-monsoon periods. Here, we explore the hydrological implications of increasing reservoir-induced and climate-related stressors in the Upper Ganga Basin (UGB), India. Flow/sediment duration curves and flood frequency analysis have been used to assess pre-and post-1995 hydrological behaviour. Our results indicate that low and moderate flows have been significantly altered, and the flood peaks have been attenuated by the operation of hydraulic structures in the Bhagirathi (western subbasin). The Alaknanda (eastern subbasin) has experienced an increase in extreme rainfall and flows post-1995. The downstream reaches experience reservoir-induced moderate flow alterations during pre-and post-monsoon and increasing extreme flood magnitudes during monsoon. Furthermore, substantial siltation upstream of the reservoirs has disrupted the upstream-downstream geomorphologic linkages.
| S-EPMC8484260 | biostudies-literature
Project description:Land-use intensification on arable land is expanding and posing a threat to biodiversity and ecosystem services worldwide. We develop methods to link funding for avian breeding habitat conservation and management at landscape scales to equilibrium abundance of a migratory species at the continental scale. We apply this novel approach to a harvested bird valued by birders and hunters in North America, the northern pintail duck (Anas acuta), a species well below its population goal. Based on empirical observations from 2007-2016, habitat conservation investments for waterfowl cost $313 M and affected <2% of the pintail's primary breeding area in the Prairie Pothole Region of Canada. Realistic scenarios for harvest and habitat conservation costing an estimated $588 M (2016 USD) led to predicted pintail population sizes <3 M when assuming average parameter values. Accounting for parameter uncertainty, converting 70-100% of these croplands to idle grassland (cost: $35.7B-50B) is required to achieve the continental population goal of 4 M individuals under the current harvest policy. Using our work as a starting point, we propose continued development of modeling approaches that link conservation funding, habitat delivery, and population response to better integrate conservation efforts and harvest management of economically important migratory species.
| S-EPMC7080806 | biostudies-literature