Bayesian spatiotemporal modelling for identifying unusual and unstable trends in mammography utilisation.
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ABSTRACT:
SUBMITTER: Duncan EW
PROVIDER: S-EPMC4885312 | biostudies-other | 2016
REPOSITORIES: biostudies-other
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Project description:This paper describes a Bayesian hierarchical approach to predict short-term concentrations of particle pollution in an urban environment, with application to inhalable particulate matter (PM10) in Greater London. We developed and compared several spatiotemporal models that differently accounted for factors affecting the spatiotemporal properties of particle concentrations. We considered two main source contributions to ambient measurements: (i) the long-range transport of the secondary fraction of particles, which temporal variability was described by a latent variable derived from rural concentrations; and (ii) the local primary component of particles (traffic- and non-traffic-related) captured by the output of the dispersion model ADMS-Urban, which site-specific effect was described by a Bayesian kriging. We also assessed the effect of spatiotemporal covariates, including type of site, daily temperature to describe the seasonal changes in chemical processes affecting local PM10 concentrations that are not considered in local-scale dispersion models and day of the week to account for time-varying emission rates not available in emissions inventories. The evaluation of the predictive ability of the models, obtained via a cross-validation approach, revealed that concentration estimates in urban areas benefit from combining the city-scale particle component and the long-range transport component with covariates that account for the residual spatiotemporal variation in the pollution process.
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Project description:Background There has been a decline in the stroke incidence across high income countries but such knowledge exists at Country or State rather than areal unit level such local government area (LGA). In this disease mapping study, we evaluate if there are local hot spots or temporal trends in TIA rate. Such knowledge will be of help in planning healthcare service delivery across regions. Methods Linked hospital discharge data (Victorian Admitted Episodes Dataset or VAED) was used to collect TIA (defined by ICD-10-AM codes G450-G459) cases from 2001 to 2011. The State of Victoria is the second most populous state in Australia, with a population of 6.7 million and can be divided into 79 administrative units or LGA. The data is anonymized and contains residence of the patient in terms of LGA but not exact location. The date of the TIA event when the patient is admitted to hospital is provided in the dataset. The number of TIAs per year was aggregated for each LGA. Standardized TIA ratios were calculated by dividing actual over expected cases for each LGA per year. We used Integrated Nested Laplace Approximation (INLA) to perform spatial and spatiotemporal regression, adjusting for hypertension, sex and population, age (≥60), and socio-economic status (SES) decile within the LGA. The final model was chosen based on the lowest the Deviance Information Criterion (DIC) and Watanabe-Akaike information criteria (WAIC). Results Choropleth maps showed a higher standardized TIA ratios in North-West rural region. Compared to the baseline model (DIC 13,159, WAIC 13,261), adding in a spatial random effect significantly improved the model (DIC 6,463, WAIC 6,667). However, adding a temporal component did not lead to a significant improvement (DIC 6,483, WAIC 6,707). Conclusion Our finding suggests a statically significant spatial component to TIA rate over regional areas but no temporal changes or yearly trends. We propose that such exploratory method should be followed by evaluation of reasons for regional variations and which in turn can identify opportunities in primary prevention of stroke, and stroke care.
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