The selection by the Asiatic black bear (Ursus thibetanus) of spring plant food items according to their nutritional values.
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ABSTRACT:
SUBMITTER: Furusaka S
PROVIDER: S-EPMC5527342 | biostudies-other | 2017
REPOSITORIES: biostudies-other
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Project description:IntroductionUrsus americanus Pallas 1780 is the largest carnivore and the only ursid in Mexico. It is considered an endangered species in the country because its distribution and population have been reduced by up to 80% because of habitat loss or furtive hunting. These problems can lead to a diet change, which could result in metabolic disorders, such as fatty acid β-oxidation defects or organic acid metabolism disorders. In our study, a free amino acid and acylcarnitine profile was characterized.MethodsPeripheral blood samples were drawn from nine free-ranging black bears in a period of five months, from June to October of 2019 in Northeastern Mexico, and 12 amino acids and 30 acylcarnitines were determined and quantified. Age differences were observed in the samples through ANOVA and post-hoc Tukey test.ResultsOnly three metabolites showed a significant difference with age: alanine (Ala) [cubs vs juvenile], free-carnitine (C0) [juvenile vs cubs] and acetylcarnitine (C2) [cubs vs adults and juvenile vs cubs].ConclusionMetabolites with variability due to age were identified, making them potential biomarkers to monitor metabolic status as early diagnosis in endangered species. This is the first study of black bear amino acid and acylcarnitine profiles, and the values found could be used as reference for free amino acid and acylcarnitine concentrations in further studies of the species.
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Project description:The American black bear (Ursus americanus) was long thought to be solitary and its social organization has not been well described. Here, we present new data on black bear social structure. The objectives of the study were to make detailed observations of the behavior of wild black bears to determine their social interactions and structure. We tested whether black bears interacted socially beyond mating and competing for resources, if black bears tracked relationships and interacted regularly even when resources were not limited, and whether the social structure of a population of black bears was based on a matrilinear hierarchy. We collected data by direct observation of bears from 1993 to 2014. Observations of 1210 social interactions at a provisioning site indicated that females compete and form matrilinear hierarchies. Dominant bears established a hierarchy for food, control of space, and control of younger bears. Post interaction scent marking took place, which suggested that dominant females were conditioning subordinates to their scent marks. Affiliative behavior occurred between related and unrelated bears and helped to establish the social structure of the bear community. Based on our data, human-bear conflicts can be reduced by behavioral modifications by humans when they encounter bears. Knowledge of bear behavior and the matrilinear hierarchy provide a basis for non-lethal management of bears that find themselves in a bear-human conflict situation.
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Project description:BackgroundSpecies of the bear family (Ursidae) are important organisms for research in molecular evolution, comparative physiology and conservation biology, but relatively little genetic sequence information is available for this group. Here we report the development and analyses of the first large scale Expressed Sequence Tag (EST) resource for the American black bear (Ursus americanus).ResultsComprehensive analyses of molecular functions, alternative splicing, and tissue-specific expression of 38,757 black bear EST sequences were conducted using the dog genome as a reference. We identified 18 genes, involved in functions such as lipid catabolism, cell cycle, and vesicle-mediated transport, that are showing rapid evolution in the bear lineage Three genes, Phospholamban (PLN), cysteine glycine-rich protein 3 (CSRP3) and Troponin I type 3 (TNNI3), are related to heart contraction, and defects in these genes in humans lead to heart disease. Two genes, biphenyl hydrolase-like (BPHL) and CSRP3, contain positively selected sites in bear. Global analysis of evolution rates of hibernation-related genes in bear showed that they are largely conserved and slowly evolving genes, rather than novel and fast-evolving genes.ConclusionWe provide a genomic resource for an important mammalian organism and our study sheds new light on the possible functions and evolution of bear genes.
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Project description:BackgroundThe major histocompatibility complex (MHC) genes are one of the most important genetic systems in the vertebrate immune response. The diversity of MHC genes may directly influence the survival of individuals against infectious disease. However, there has been no investigation of MHC diversity in the Asiatic black bear (Ursus thibetanus). Here, we analyzed 270-bp nucleotide sequences of the entire exon 2 region of the MHC DQB gene by using 188 samples from the Japanese black bear (Ursus thibetanus japonicus) from 12 local populations.ResultsAmong 185 of 188 samples, we identified 44 MHC variants that encoded 31 different amino acid sequences (allotypes) and one putative pseudogene. The phylogenetic analysis suggests that MHC variants detected from the Japanese black bear are derived from the DQB locus. One of the 31 DQB allotypes, Urth-DQB*01, was found to be common to all local populations. Moreover, this allotype was shared between the black bear on the Asian continent and the Japanese black bear, suggesting that Urth-DQB*01 might have been maintained in the ancestral black bear population for at least 300,000 years. Our findings, from calculating the ratio of non-synonymous to synonymous substitutions, indicate that balancing selection has maintained genetic variation of peptide-binding residues at the DQB locus of the Japanese black bear. From examination of genotype frequencies among local populations, we observed a considerably lower level of observed heterozygosity than expected.ConclusionsThe low level of observed heterozygosity suggests that genetic drift reduced DQB diversity in the Japanese black bear due to a bottleneck event at the population or species level. The decline of DQB diversity might have been accelerated by the loss of rare variants that have been maintained by negative frequency-dependent selection. Nevertheless, DQB diversity of the black bear appears to be relatively high compared with some other endangered mammalian species. This result suggests that the Japanese black bears may also retain more potential resistance against pathogens than other endangered mammalian species. To prevent further decline of potential resistance against pathogens, a conservation policy for the Japanese black bear should be designed to maintain MHC rare variants in each local population.
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Project description:We obtained the complete mitochondrial genome of U.thibetanus mupinensis by DNA sequencing based on the PCR fragments of 18 primers we designed. The results indicate that the mtDNA is 16,868 bp in size, encodes 13 protein genes, 22 tRNA genes, and 2 rRNA genes, with an overall H-strand base composition of 31.2% A, 25.4% C, 15.5% G and 27.9% T. The sequence of the control region (CR) located between tRNA-Pro and tRNA-Phe is 1422 bp in size, consists of 8.43% of the whole genome, GC content is 51.9% and has a 6bp tandem repeat and two 10bp tandem repeats identified by using the Tandem Repeats Finder. U. thibetanus mupinensis mitochondrial genome shares high similarity with those of three other Ursidae: U. americanus (91.46%), U. arctos (89.25%) and U. maritimus (87.66%).
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Project description:Studying habitat overlap between sympatric species is one of the best ways to identify interspecies relationships and to direct conservation efforts so that multiple species can benefit. However, studies exploring interspecies relationships are very limited in Nepal, making it difficult for the government of Nepal and conservation partners to manage wildlife in their habitats, especially in Himalayan protected areas. In this study, we identified habitat overlap between Asiatic black bear (Ursus thibetanus) and red panda (Ailurus fulgens) as well as important habitat types for both species in the Makalu Barun National Park, Nepal using Maximum Entropy (MaxEnt) modeling. GPS points of species occurrence were collected from the field, and environmental variables were extracted from freely available sources. We found that the study area contained 647 km2 of Asiatic black bear habitat and 443 km2 of the red panda habitat. 368 km2 supported both species, which constituted 57% of the Asiatic black bear habitat and 83% of the red panda habitat. We found that conifer forest was the most important habitat type for both species. Because the largest portions of both species' habitat were located inside the buffer zone, a peripheral zone of national park, conservation efforts for these sympatric species should be focused inside the buffer zone to be most effective.
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Project description:Tick abundance and diagnosed cases of tick-borne diseases have been increasing in the United States. American black bear (Ursus americanus) populations have also been increasing in the eastern United States. As a competent host of several species of ticks and a mammal capable of traveling long distances, the role of black bears as hosts for ticks requires further evaluation. Ectoparasite surveys were conducted on black bears in Pennsylvania to evaluate tick presence, abundance, spatial distribution, and association with Sarcoptes scabiei, the etiological agent of sarcoptic mange, on bears to better understand their role in tick ecology and to improve on-host surveillance techniques. Tick burden was evaluated using standard area sampling (10.16 × 10.16 cm squares) on pre-designated body regions on black bears from June 2018-December 2019. In total, 278 unique individual black bears were evaluated, with all ticks identified as Ixodes scapularis (n = 1976; 76.7% adults, 23.3% immatures). Tick presence differed by body region on bears, with the highest percentage of tick observations located on bear ears and muzzle. Ticks also partitioned on black bears by life-stage, with immature ticks primarily recorded on the lower extremities of bears and adult ticks primarily recorded on the front-quarters of bears. This includes the first known record of I. scapularis larvae parasitizing black bears, and observations of all three mobile life-stages concurrently parasitizing bears. Tick abundance was also statistically significant dependent on season, with the highest abundance of ticks recorded in spring and lowest abundance in fall. Adult ticks were less likely to be present on bears with mange. These data reveal the important role black bears may serve in tick ecology and dispersal as all three mobile life-stages of I. scapularis were found parasitizing a mammal capable of traveling far distances in a region with high numbers of Lyme disease cases.
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