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Bronchial biopsy specimen as a surrogate for DNA methylation analysis in inoperable lung cancer.


ABSTRACT: This study was aimed at understanding whether bronchial biopsy specimen can be used as a surrogate for DNA methylation analysis in surgically resected lung cancer.A genome-wide methylation was analyzed in 42 surgically resected tumor tissues, 136 bronchial washing, 12 sputum, and 8 bronchial biopsy specimens using the Infinium HumanMethylation450 BeadChip, and models for prediction of lung cancer were evaluated using TCGA lung cancer data.Four thousand seven hundred and twenty-six CpGs (P??0.05, Wilcoxon rank-sum test). However, their methylation levels were significantly different between paired bronchial biopsy and washing (P?

SUBMITTER: Um SW 

PROVIDER: S-EPMC5738682 | biostudies-other | 2017

REPOSITORIES: biostudies-other

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Bronchial biopsy specimen as a surrogate for DNA methylation analysis in inoperable lung cancer.

Um Sang-Won SW   Kim Hong Kwan HK   Kim Yujin Y   Lee Bo Bin BB   Kim Dongho D   Han Joungho J   Kim Hojoong H   Shim Young Mog YM   Kim Duk-Hwan DH  

Clinical epigenetics 20171220


<h4>Background</h4>This study was aimed at understanding whether bronchial biopsy specimen can be used as a surrogate for DNA methylation analysis in surgically resected lung cancer.<h4>Methods</h4>A genome-wide methylation was analyzed in 42 surgically resected tumor tissues, 136 bronchial washing, 12 sputum, and 8 bronchial biopsy specimens using the Infinium HumanMethylation450 BeadChip, and models for prediction of lung cancer were evaluated using TCGA lung cancer data.<h4>Results</h4>Four t  ...[more]

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