Dataset Information

Bacterial diversity and community structure in the rhizosphere of four Ferula species.

ABSTRACT: The medicinal value of the Ferula L. has been recognized for more than a thousand years. Wild stocks of Ferula have declined dramatically because high economic value has led to overharvesting. The objective of this study was to compare the rhizosphere microbial community of four Ferula species [F. syreitschikowii K.-Pol., F. gracilis (Ledeb.) Ledeb., F. ferulaeoides (Steud.) Korov., and F. lehmannii Boiss.] in the northern part of Xinjiang, China. The 16S rRNA sequences of rhizosphere bacteria were obtained with an Illumina paired-end sequence platform. Analysis was conducted to determine the richness and diversity of the rhizosphere bacterial communities. Two-way ANOVA indicated that plant species and soil depth had no significant effect on the alpha diversity of rhizobacteria. Linear discriminant analysis effect size showed that F. lehmannii followed by F. ferulaeoides had the most biomarkers and the highest taxon level, F. syreitschikowii and F. gracilis the least, while F. syreitschikowii and F. gracilis had the least property. This trend is consistent with reports that the medicinal value of F. lehmannii and F. ferulaeoides is greater than that of F. gracilis and F. syreitschikowii. The results of this study provide information that could be used for the commercial cultivation of Ferula spp.

SUBMITTER: Wang X

PROVIDER: S-EPMC5871818 | biostudies-other | 2018 Mar

REPOSITORIES: biostudies-other

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Bacterial diversity and community structure in the rhizosphere of four Ferula species.

Wang Xiuling X Wang Zhongke Z Jiang Ping P He Yaling Y Mu Yudi Y Lv Xinhua X Zhuang Li L

Scientific reports 20180328 1

The medicinal value of the Ferula L. has been recognized for more than a thousand years. Wild stocks of Ferula have declined dramatically because high economic value has led to overharvesting. The objective of this study was to compare the rhizosphere microbial community of four Ferula species [F. syreitschikowii K.-Pol., F. gracilis (Ledeb.) Ledeb., F. ferulaeoides (Steud.) Korov., and F. lehmannii Boiss.] in the northern part of Xinjiang, China. The 16S rRNA sequences of rhizosphere bacteria w ...[more]

PMID: 29593299

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Project description:Rhizosphere microbial communities are of great importance to mediate global biogeochemical cycles, plant growth, and fitness. Yet, the processes that drive their assembly remain unclear. The perennial shrubs Caragana spp., which is well known for their role in soil and water conservation, provides an ideal system to study the biogeography of rhizosphere microorganism communities within natural ecosystems. In order to detect how bacterial rhizosphere communities vary in terms of community diversity and composition, the rhizosphere bacterial community of three Caragana species, Caragana microphylla Lam., C. liouana Zhao, and C. korshinskii Kom., which distributed in arid and semi-arid region of northern China were investigated. Across species, Proteobacteria (61.1%), Actinobacteria (16.0%), Firmicutes (8.6%), Bacteroidetes (3.0%), Acidobacteria (3.5%), Gemmatimonadetes (1.4%), and Cyanobacteria (1.0%) were the most dominant phyla in the rhizosphere of the three Caragana species. The relative abundance of Cyanobacteria was significantly higher in rhizosphere of C. korshinskii Kom. compared with C. microphylla Lam. and C. liouana Zhao, while the opposite was found for Gemmatimonadetes in rhizosphere of C. microphylla Lam. relative to C. liouana Zhao. Stepwise multiple linear regression analysis showed that both diversity and richness of the bacterial rhizosphere communities significantly and positively correlated with soil pH (p < 0.01). Distance-based redundancy analysis indicated that soil properties and non-soil parameters detected there accounted for 47.5% of bacterial phylogenetic structure variation (p < 0.01) all together. Meanwhile, soil total phosphorus accounted for the greatest proportion of community structure variance (9.7%, p < 0.01), followed by electrical conduction (6.5%), altitude (5.8%), soil pH (5.4%), mean annual precipitation (3.6%) and total nitrogen (3.6%, p < 0.05 in all cases). Furthermore, partial Mantel test suggested that bacterial rhizosphere community structure significantly correlated with geographical distance, indicating that the less geographical distant sample sites tend to harbor more similar bacterial rhizosphere community. Our results shed new light on the mechanisms of coevolution and interaction between long-lived plants and their rhizosphere bacterial communities across environmental gradients.

Dataset Information

Bacterial diversity and community structure in the rhizosphere of four Ferula species.

Publications

Bacterial diversity and community structure in the rhizosphere of four Ferula species.

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