Dataset Information

Gaseous flow through heterogeneous, partially connected networks of pipes.

ABSTRACT: Simulations of flow of an ideal gas through heterogeneous simple cubic pipe networks with different pipe radius distributions and variable bond coordination numbers were performed. Networks with monomodal and bimodal radius distributions were constructed. A very wide range of Knudsen numbers was achieved. Flow simulations of purely viscous gases and incompressible liquids were also carried out for comparison. The permeability to gas in the purely viscous regime was larger than the permeability to an incompressible liquid. Based on a variety of computational tests, this result was likely not a numerical artifact. The simulated macroscopic flow behavior differed from the underlying single pipe model, depending on the radius distribution, network connectivity and magnitude of the externally applied pressure gradient, and was compatible with the Klinkenberg analysis only when the maximum Knudsen number used in each simulation was lower than 1. In this condition, the Klinkenberg coefficient was nearly proportional to the inverse of the network hydraulic radius while the effect of the radius distribution was weak and that of the network connectivity essentially negligible. The bimodal simulations displayed a typical percolation behavior, with the Klinkenberg coefficient remaining constant as long as the large pipe population was connected.

SUBMITTER: Bernabe Y

PROVIDER: S-EPMC6175833 | biostudies-other | 2018 Oct

REPOSITORIES: biostudies-other

ACCESS DATA

Publications

Gaseous flow through heterogeneous, partially connected networks of pipes.

Bernabé Yves Y

Scientific reports 20181008 1

Simulations of flow of an ideal gas through heterogeneous simple cubic pipe networks with different pipe radius distributions and variable bond coordination numbers were performed. Networks with monomodal and bimodal radius distributions were constructed. A very wide range of Knudsen numbers was achieved. Flow simulations of purely viscous gases and incompressible liquids were also carried out for comparison. The permeability to gas in the purely viscous regime was larger than the permeability t ...[more]

PMID: 30297815

Similar Datasets

Project description:BackgroundCircular RNAs (circRNAs) are special noncoding RNA molecules with closed loop structures. Compared with the traditional linear RNA, circRNA is more stable and not easily degraded. Many studies have shown that circRNAs are involved in the regulation of various diseases and cancers. Determining the functions of circRNAs in mammalian cells is of great significance for revealing their mechanism of action in physiological and pathological processes, diagnosis and treatment of diseases. However, determining the functions of circRNAs on a large scale is a challenging task because of the high experimental costs.ResultsIn this paper, we present a hierarchical deep learning model, DeepciRGO, which can effectively predict gene ontology functions of circRNAs. We build a heterogeneous network containing circRNA co-expressions, protein-protein interactions and protein-circRNA interactions. The topology features of proteins and circRNAs are calculated using a novel representation learning approach HIN2Vec across the heterogeneous network. Then, a deep multi-label hierarchical classification model is trained with the topology features to predict the biological process function in the gene ontology for each circRNA. In particular, we manually curated a benchmark dataset containing 185 GO annotations for 62 circRNAs, namely, circRNA2GO-62. The DeepciRGO achieves promising performance on the circRNA2GO-62 dataset with a maximum F-measure of 0.412, a recall score of 0.400, and an accuracy of 0.425, which are significantly better than other state-of-the-art RNA function prediction methods. In addition, we demonstrate the considerable potential of integrating multiple interactions and association networks.ConclusionsDeepciRGO will be a useful tool for accurately annotating circRNAs. The experimental results show that integrating multi-source data can help to improve the predictive performance of DeepciRGO. Moreover, The model also can combine RNA structure and sequence information to further optimize predictive performance.

Dataset Information

Gaseous flow through heterogeneous, partially connected networks of pipes.

Publications

Gaseous flow through heterogeneous, partially connected networks of pipes.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure