Dataset Information

Trawl ban in a heavily exploited marine environment: Responses in population dynamics of four stomatopod species.

ABSTRACT: Intensive trawling activities in Hong Kong waters have seriously depleted fishery resources and damaged marine benthic habitats over the last four decades. To minimize further destruction and rehabilitate fishery resources, the Hong Kong Government implemented a permanent territory-wide trawling closure on 31 December 2012. Such a trawl ban creates a unique opportunity to investigate recoveries in ecosystem structure and function following a major shift in disturbance regime by removing impacts from a major gear. This study was designed to test the hypothesis that dominant predatory mantis shrimps, including Harpiosquilla harpax, Miyakella nepa, Oratosquillina interrupta, and Oratosquilla oratoria would show signs of recovery following the trawl ban. Their population dynamics were investigated before and after the trawl ban. The results showed that their mean weight, mean carapace length and proportion of large-sized individuals increased significantly 3.5 years after the trawl ban, whilst their abundance, biomass and maximum length remained unchanged. This study suggests that the stomatopod assemblage in the human-dominated Hong Kong waters shows some initial signs of possible recovery following the trawl ban but also highlights the complexity of implementing fishery management and detecting changes resulted from management measures in a heavily urbanized seascape where many biotic and abiotic factors can influence their population dynamics.

SUBMITTER: Tao LSR

PROVIDER: S-EPMC6294824 | biostudies-other | 2018 Dec

REPOSITORIES: biostudies-other

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Publications

Trawl ban in a heavily exploited marine environment: Responses in population dynamics of four stomatopod species.

Tao Lily S R LSR Lui Karen K Y KKY Lau Edward T C ETC Ho Kevin K Y KKY Mak Yanny K Y YKY Sadovy de Mitcheson Yvonne Y Leung Kenneth M Y KMY

Scientific reports 20181214 1

Intensive trawling activities in Hong Kong waters have seriously depleted fishery resources and damaged marine benthic habitats over the last four decades. To minimize further destruction and rehabilitate fishery resources, the Hong Kong Government implemented a permanent territory-wide trawling closure on 31 December 2012. Such a trawl ban creates a unique opportunity to investigate recoveries in ecosystem structure and function following a major shift in disturbance regime by removing impacts ...[more]

PMID: 30552339

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Project description:Disulfide bonds are covalent bonds that connect nonlocal fragments of proteins, and they are unique post-translational modifications of proteins. They require the oxidizing environment to be stable, which occurs for example during oxidative stress; however, in a cell the reductive environment is maintained, lowering their stability. Despite many years of research on disulfide bonds, their role in the protein life cycle is not fully understood and seems to strictly depend on a system or process in which they are involved. In this article, coarse-grained UNited RESidue (UNRES), and all-atom Assisted Model Building with Energy Refinement (AMBER) force fields were applied to run a series of steered molecular dynamics (SMD) simulations of one of the most studied, but still not fully understood, proteins─ribonuclease A (RNase A). SMD simulations were performed to study the mechanical stability of RNase A in different oxidative-reductive environments. As disulfide bonds (and any other covalent bonds) cannot break/form in any classical all-atom force field, we applied additional restraints between sulfur atoms of reduced cysteines which were able to mimic the breaking of the disulfide bonds. On the other hand, the coarse-grained UNRES force field enables us to study the breaking/formation of the disulfide bonds and control the reducing/oxidizing environment owing to the presence of the designed distance/orientation-dependent potential. This study reveals that disulfide bonds have a strong influence on the mechanical stability of RNase A only in a highly oxidative environment. However, the local stability of the secondary structure seems to play a major factor in the overall stability of the protein. Both our thermal unfolding and mechanical stretching studies show that the most stable disulfide bond is Cys65-Cys72. The breaking of disulfide bonds Cys26-Cys84 and Cys58-Cys110 is associated with large force peaks. They are structural bridges, which are mostly responsible for stabilizing the RNase A conformation, while the presence of the remaining two bonds (Cys65-Cys72 and Cys40-Cys95) is most likely connected with the enzymatic activity rather than the structural stability of RNase A in the cytoplasm. Our results prove that disulfide bonds are indeed stabilizing fragments of the proteins, but their role is strongly redox environment-dependent.

Dataset Information

Trawl ban in a heavily exploited marine environment: Responses in population dynamics of four stomatopod species.

Publications

Trawl ban in a heavily exploited marine environment: Responses in population dynamics of four stomatopod species.

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