Genomics

Dataset Information

0

CCRI COVID Patient Data Access Committee


ABSTRACT: Data Access Committee EGAC00001001989

PROVIDER: EGAC00001001989 | EGA |

REPOSITORIES: EGA

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Publications

SARS-CoV-2 mutations in MHC-I-restricted epitopes evade CD8<sup>+</sup> T cell responses.

Agerer Benedikt B   Koblischke Maximilian M   Gudipati Venugopal V   Montaño-Gutierrez Luis Fernando LF   Smyth Mark M   Popa Alexandra A   Genger Jakob-Wendelin JW   Endler Lukas L   Florian David M DM   Mühlgrabner Vanessa V   Graninger Marianne M   Aberle Stephan W SW   Husa Anna-Maria AM   Shaw Lisa Ellen LE   Lercher Alexander A   Gattinger Pia P   Torralba-Gombau Ricard R   Trapin Doris D   Penz Thomas T   Barreca Daniele D   Fae Ingrid I   Wenda Sabine S   Traugott Marianna M   Walder Gernot G   Pickl Winfried F WF   Thiel Volker V   Allerberger Franz F   Stockinger Hannes H   Puchhammer-Stöckl Elisabeth E   Weninger Wolfgang W   Fischer Gottfried G   Hoepler Wolfgang W   Pawelka Erich E   Zoufaly Alexander A   Valenta Rudolf R   Bock Christoph C   Paster Wolfgang W   Geyeregger René R   Farlik Matthias M   Halbritter Florian F   Huppa Johannes B JB   Aberle Judith H JH   Bergthaler Andreas A  

Science immunology 20210301 57


CD8<sup>+</sup> T cell immunity to SARS-CoV-2 has been implicated in COVID-19 severity and virus control. Here, we identified nonsynonymous mutations in MHC-I-restricted CD8<sup>+</sup> T cell epitopes after deep sequencing of 747 SARS-CoV-2 virus isolates. Mutant peptides exhibited diminished or abrogated MHC-I binding in a cell-free in vitro assay. Reduced MHC-I binding of mutant peptides was associated with decreased proliferation, IFN-γ production and cytotoxic activity of CD8<sup>+</sup> T  ...[more]

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