Genomics,Multiomics

Dataset Information

0

Ena-DATASET-DKFZ-IBIOS-30-07-2014-09:29:18:389-402 - samples


ABSTRACT: Whole exome sequencing data for ependymomas (42 tumor-control pairs). See Mack, Witt et al. Nature 506(7489):445-50, 2014 (PMID: 24553142).

PROVIDER: EGAD00001000951 | EGA |

REPOSITORIES: EGA

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Publications

Epigenomic alterations define lethal CIMP-positive ependymomas of infancy.

Mack S C SC   Witt H H   Piro R M RM   Gu L L   Zuyderduyn S S   Stütz A M AM   Wang X X   Wang X X   Gallo M M   Garzia L L   Zayne K K   Zhang X X   Ramaswamy V V   Jäger N N   Jones D T W DT   Sill M M   Pugh T J TJ   Ryzhova M M   Wani K M KM   Shih D J H DJ   Head R R   Remke M M   Bailey S D SD   Zichner T T   Faria C C CC   Barszczyk M M   Stark S S   Seker-Cin H H   Hutter S S   Johann P P   Bender S S   Hovestadt V V   Tzaridis T T   Dubuc A M AM   Northcott P A PA   Peacock J J   Bertrand K C KC   Agnihotri S S   Cavalli F M G FM   Clarke I I   Nethery-Brokx K K   Creasy C L CL   Verma S K SK   Koster J J   Wu X X   Yao Y Y   Milde T T   Sin-Chan P P   Zuccaro J J   Lau L L   Pereira S S   Castelo-Branco P P   Hirst M M   Marra M A MA   Roberts S S SS   Fults D D   Massimi L L   Cho Y J YJ   Van Meter T T   Grajkowska W W   Lach B B   Kulozik A E AE   von Deimling A A   Witt O O   Scherer S W SW   Fan X X   Muraszko K M KM   Kool M M   Pomeroy S L SL   Gupta N N   Phillips J J   Huang A A   Tabori U U   Hawkins C C   Malkin D D   Kongkham P N PN   Weiss W A WA   Jabado N N   Rutka J T JT   Bouffet E E   Korbel J O JO   Lupien M M   Aldape K D KD   Bader G D GD   Eils R R   Lichter P P   Dirks P B PB   Pfister S M SM   Korshunov A A   Taylor M D MD  

Nature 20140219 7489


Ependymomas are common childhood brain tumours that occur throughout the nervous system, but are most common in the paediatric hindbrain. Current standard therapy comprises surgery and radiation, but not cytotoxic chemotherapy as it does not further increase survival. Whole-genome and whole-exome sequencing of 47 hindbrain ependymomas reveals an extremely low mutation rate, and zero significant recurrent somatic single nucleotide variants. Although devoid of recurrent single nucleotide variants  ...[more]

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