Genomics

Dataset Information

0

Ena-DATASET-SC-16-09-2014-14:22:12:125-153 - samples


ABSTRACT: Description not provided

PROVIDER: EGAD00001001014 | EGA |

REPOSITORIES: EGA

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Publications

Origins and functional consequences of somatic mitochondrial DNA mutations in human cancer.

Ju Young Seok YS   Alexandrov Ludmil B LB   Gerstung Moritz M   Martincorena Inigo I   Nik-Zainal Serena S   Ramakrishna Manasa M   Davies Helen R HR   Papaemmanuil Elli E   Gundem Gunes G   Shlien Adam A   Bolli Niccolo N   Behjati Sam S   Tarpey Patrick S PS   Nangalia Jyoti J   Massie Charles E CE   Butler Adam P AP   Teague Jon W JW   Vassiliou George S GS   Green Anthony R AR   Du Ming-Qing MQ   Unnikrishnan Ashwin A   Pimanda John E JE   Teh Bin Tean BT   Munshi Nikhil N   Greaves Mel M   Vyas Paresh P   El-Naggar Adel K AK   Santarius Tom T   Collins V Peter VP   Grundy Richard R   Taylor Jack A JA   Hayes D Neil DN   Malkin David D   Foster Christopher S CS   Warren Anne Y AY   Whitaker Hayley C HC   Brewer Daniel D   Eeles Rosalind R   Cooper Colin C   Neal David D   Visakorpi Tapio T   Isaacs William B WB   Bova G Steven GS   Flanagan Adrienne M AM   Futreal P Andrew PA   Lynch Andy G AG   Chinnery Patrick F PF   McDermott Ultan U   Stratton Michael R MR   Campbell Peter J PJ  

eLife 20141001


Recent sequencing studies have extensively explored the somatic alterations present in the nuclear genomes of cancers. Although mitochondria control energy metabolism and apoptosis, the origins and impact of cancer-associated mutations in mtDNA are unclear. In this study, we analyzed somatic alterations in mtDNA from 1675 tumors. We identified 1907 somatic substitutions, which exhibited dramatic replicative strand bias, predominantly C > T and A > G on the mitochondrial heavy strand. This strand  ...[more]

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