Genomics

Dataset Information

0

PCGP EWS WGS - samples


ABSTRACT: DATA FILES FOR SJEWS-WGS

PROVIDER: EGAD00001001020 | EGA |

REPOSITORIES: EGA

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Publications

Genomic landscape of Ewing sarcoma defines an aggressive subtype with co-association of STAG2 and TP53 mutations.

Tirode Franck F   Surdez Didier D   Ma Xiaotu X   Parker Matthew M   Le Deley Marie Cécile MC   Bahrami Armita A   Zhang Zhaojie Z   Lapouble Eve E   Grossetête-Lalami Sandrine S   Rusch Michael M   Reynaud Stéphanie S   Rio-Frio Thomas T   Hedlund Erin E   Wu Gang G   Chen Xiang X   Pierron Gaelle G   Oberlin Odile O   Zaidi Sakina S   Lemmon Gordon G   Gupta Pankaj P   Vadodaria Bhavin B   Easton John J   Gut Marta M   Ding Li L   Mardis Elaine R ER   Wilson Richard K RK   Shurtleff Sheila S   Laurence Valérie V   Michon Jean J   Marec-Bérard Perrine P   Gut Ivo I   Downing James J   Dyer Michael M   Zhang Jinghui J   Delattre Olivier O  

Cancer discovery 20140915 11


<h4>Unlabelled</h4>Ewing sarcoma is a primary bone tumor initiated by EWSR1-ETS gene fusions. To identify secondary genetic lesions that contribute to tumor progression, we performed whole-genome sequencing of 112 Ewing sarcoma samples and matched germline DNA. Overall, Ewing sarcoma tumors had relatively few single-nucleotide variants, indels, structural variants, and copy-number alterations. Apart from whole chromosome arm copy-number changes, the most common somatic mutations were detected in  ...[more]

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