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ICGC Oesophageal Adenocarcinoma sequence data - fc_paper_rna_release - samples

ABSTRACT: Data supporting: "Patient-specific detection of cancer genes reveals recurrently perturbed processes in esophageal adenocarcinoma." Mourikis et al. RNAseq (BAM files) 137 samples

PROVIDER: EGAD00001004776 | EGA |

REPOSITORIES: EGA

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ICGC Oesophageal Adenocarcinoma sequence data - fc_paper_dna_release - samples

Project description:Data supporting: "Patient-specific detection of cancer genes reveals recurrently perturbed processes in esophageal adenocarcinoma." Mourikis et al. WGS (BAM files) 521 samples

| EGAD00001004775 | EGA

ICGC Oesophageal Adenocarcinoma sequence data - af_driver_paper_rna_release - samples

Project description:Data supporting: "The landscape of selection in 551 Esophageal Adenocarcinomas defines genomic biomarkers for the clinic." Frankell et al. RNAseq (BAM files) 116 tumours

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ICGC Oesophageal Adenocarcinoma sequence data - af_driver_paper_release - samples

Project description:Data supporting: "The landscape of selection in 551 Esophageal Adenocarcinomas defines genomic biomarkers for the clinic." Frankell et al. WGS (BAM files) 379 matched tumour-normal pairs

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ICGC Oesophageal Adenocarcinoma sequence data - xl_organoid_paper_release - samples

Project description:Data supporting: "Esophageal adenocarcinoma organoid cultures recapitulate human disease heterogeneity and provide a model for clonality studies and precision therapeutics." Li et al. WGS (BAM files) RNAseq (BAM files) Tumours, organoids, normals

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ICGC Oesophageal Adenocarcinoma sequence data - an_paper_release - samples

Project description:Data supporting: "Genomic evidence supports a clonal diaspora model for metastases of esophageal adenocarcinoma." Noorani et al. WGS (BAM files) 134 samples for 18 cases Includes primary, lymph-node, distant metastatic, Barrett's and normal samples.

| EGAD00001005434 | EGA

ICGC Oesophageal Adenocarcinoma sequence data - kno_paper_bulk_rna_tumour_release - samples

Project description:Data supporting: Ã¢Â€ÂœDeep molecular phenotyping reveals the identity of BarrettÃ¢Â€Â™s esophagus and its malignant transition.Ã¢Â€Â Nowicki-Osuch, Zhuang et al. RNAseq (BAM files) 241 tumour samples

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ICGC Oesophageal Adenocarcinoma sequence data - sa_copy_number_paper_release - samples

Project description:Data supporting: "Low-cost and clinically applicable copy number profiling using repeat DNA." Abujudeh et al. DNA WGS (BAM files) DNA fastSeq (fastq files) Tumours, Barrett's, normals.

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Identification of neoantigens in oesophageal adenocarcinoma

Project description:We present data from tissues of seven oesophageal adenocarcinomas of CD4 and CD8 T cell epitopes eluted from the cell surface using mass spectrometry (immunopeptidomics) of presented HLA bound peptides.This dataset forms part of the publication:Nicholas, B., Bailey, A., McCann, K.J., Wood, O., Walker, R.C., Parker, R., Ternette, N., Elliott, T., Underwood, T.J., Johnson, P. and Skipp, P. (2022), Identification of neoantigens in esophageal adenocarcinoma. Immunology. Accepted Author Manuscript. https://doi.org/10.1111/imm.13578

2022-09-27 | PXD031108 | Pride

ATAC-seq of oesophageal adenocarcinoma cell line MFD-1

Project description:The open chromatin of new esophageal adenocarcinoma cell line MFD-1 has been profiled by ATAC-seq.

2018-04-06 | E-MTAB-6720 | biostudies-arrayexpress

ICGC Oesophageal Adenocarcinoma sequence data - 129_cohort - samples

Project description:Sequencing data for ICGC Oesophageal Adenocarcinoma tissue samples - 129_cohort EAC whole genomic sequencing data - Publication Secrier & Li et al., 2016, Nature Genetics

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