Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sequencing data for oesophageal and related samples - aks_paper_dna_release - samples

ABSTRACT: Data supporting: Ã¢Â€ÂœMulti-omic cross-sectional cohort study of pre-malignant BarrettÃ¢Â€Â™s esophagus reveals structural variation and retrotransposon activity occur early in cancer evolution.Ã¢Â€Â Katz-Summercorn, Jammula et al. WGS (BAM files)

PROVIDER: EGAD00001006349 | EGA |

REPOSITORIES: EGA

ACCESS DATA

Json Xml

Similar Datasets

Sequencing data for oesophageal and related samples - aks_paper_rna_release - samples

Project description:Data supporting: Ã¢Â€ÂœMulti-omic cross-sectional cohort study of pre-malignant BarrettÃ¢Â€Â™s esophagus reveals structural variation and retrotransposon activity occur early in cancer evolution.Ã¢Â€Â Katz-Summercorn, Jammula et al. RNAseq (BAM files)

| EGAD00001006353 | EGA

Sequencing for oesophageal and related samples - kno_paper_scRNA_release - samples

Project description:Data supporting: Ã¢Â€ÂœDeep molecular phenotyping reveals the identity of BarrettÃ¢Â€Â™s esophagus and its malignant transition.Ã¢Â€Â Nowicki-Osuch, Zhuang et al. scRNAseq (BAM files) 38 Barrett's and normal samples

| EGAD00001005438 | EGA

Analysis for oesophageal and related samples - kno_paper_cell_release - samples

Project description:Data supporting: Ã¢Â€ÂœDeep molecular phenotyping reveals the identity of BarrettÃ¢Â€Â™s esophagus and its malignant transition.Ã¢Â€Â Nowicki-Osuch, Zhuang et al. Single cell metadata and analysis 38 Barrett's and normals

| EGAD00001005455 | EGA

Sequencing data for oesophageal and related samples - kno_paper_bulk_rna_barretts_normal_release - samples

Project description:Data supporting: Ã¢Â€ÂœDeep molecular phenotyping reveals the identity of BarrettÃ¢Â€Â™s esophagus and its malignant transition.Ã¢Â€Â Nowicki-Osuch, Zhuang et al. RNAseq (BAM files) 12 Barrett's samples 12 normal oesophageal samples 11 normal gastric cardia samples

| EGAD00001006882 | EGA

Sequencing for oesophageal and related samples - kno_paper_dna_release - samples

Project description:Data supporting: Ã¢Â€ÂœDeep molecular phenotyping reveals the identity of BarrettÃ¢Â€Â™s esophagus and its malignant transition.Ã¢Â€Â Nowicki-Osuch, Zhuang et al. WGS (BAM files) 5 Barrett's samples 5 normal oesophageal samples 5 normal gastric cardia samples 5 normal duodenal samples

| EGAD00001006874 | EGA

Transcription profiling of esophagus samples from eight human patients with Barretts associated adenocarcinomas

Project description:Samples were obtained from 8 patients with Barrett's associated adenocarcinomas after transhiatal esophagectomy. Samples representative of the normal esophageal epithelium (N), BarrettÃ¢ÂÂs esophagus (B) and esophageal adenocarcinomas (ADC) were obtained from every patient by experienced GI pathologists. RNA were extracted and samples were profiled for detection of genes differentially expressed in B and ADC relative to N and in ADC relative to B.

2007-08-06 | E-GEOD-1420 | biostudies-arrayexpress

ICGC Oesophageal Adenocarcinoma sequence data - kno_paper_bulk_rna_tumour_release - samples

| EGAD00001005388 | EGA

Sequencing data for oesophageal and related samples - cr_paper_rna_release - samples

Project description:Data supporting: "Repurposing of KLF5 activates a cell cycle signature during the progression from BarrettÃ¢Â€Â™s Oesophagus to Oesophageal Adenocarcinoma." Rogerson et al. RNA-seq data 2 samples

| EGAD00001005915 | EGA

Sequencing data for oesophageal and related samples - Black et al (WGS BOs/normals) - samples

Project description:Data supporting: "Understanding the malignant potential of gastric metaplasia of the oesophagus and its relevance to BarrettÃ¢Â€Â™s Oesophagus surveillance: individual-level data analysis" Black et al (WGS BOs/normals)

| EGAD00001011255 | EGA

Sequencing data for oesophageal and related samples - Black et al (WES OACs/BOs/normals) - samples

| EGAD00001011188 | EGA