Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

SHAH_H000185_N01_02_WG01_DATASET - samples

ABSTRACT: Whole genome sequencing of normal sample for triple negative breast cancer patient SA609

PROVIDER: EGAD00001009219 | EGA |

REPOSITORIES: EGA

ACCESS DATA

Json Xml

Similar Datasets

SHAH_H000185_T22_02_WG01_DATASET - samples

Project description:Whole genome sequencing of tumour sample for triple negative breast cancer patient SA609

| EGAD00001009262 | EGA

SIPA1 expression in breast cancer patient

Project description:To study the expression of SIPA1 in patients with metastatic triple-negative breast cancer, we obtained a subcutaneous metastatic sample from a patient with stage III triple-negative breast cancer and performed single-cell transcriptome sequencing

2022-12-31 | GSE221731 | GEO

Gene expression profiling of triple negative breast cancer, normal ductal cells, and normal tissues

Project description:To identify novel molecular targets for triple negative breast cancer (TNBC), we have employed whole genome microarray expression profiling. We purified 30 surgically resected breast cancer tissue diagnosed triple negative by means of immunohistochemical staining and 13 normal mammary ductal cells with lasermicrobeam microdissection system (PALM MicroBeam, Carl Zeiss MicroImaging Co., Ltd), performed whole human genome microarray, and compared gene expression levels of TNBC, normal mammary ductal cells, and normal vital organs to develop molecular targets with a minimum risk.

2012-12-21 | GSE38959 | GEO

Identification of Prognostic Genes for Recurrent Risk Prediction in Triple Negative Breast Cancer Patients in Taiwan

Project description:Discrepancies in the prognosis of triple negative breast cancer exist between Caucasian and Asian populations. Yet, the gene signature of triple negative breast cancer specifically for Asians has not become available. Therefore, the purpose of this study is to construct a prediction model for recurrence of triple negative breast cancer in Taiwanese patients. Whole genome expression profiling of breast cancers from 185 patients in Taiwan from 1995 to 2008 was performed, and the results were compared to the previously published literature to detect differences between Asian and Western patients. Pathway analysis and Cox proportional hazard models were applied to construct a prediction model for the recurrence of triple negative breast cancer. Most expression data of samples (181/185) were reanalyzed from previous studies already uploaded to GEO (see "reanalysis of" links below). Four additional gene expression profiling data of triple negative breast cancer sample were added to this study.

2012-02-02 | E-GEOD-33095 | biostudies-arrayexpress

SHAH_H000619_N01_01_WG01_DATASET - samples

Project description:Whole genome sequencing of normal sample for triple negative breast cancer patient SA409

| EGAD00001009569 | EGA

SHAH_H000599_N01_01_WG01_DATASET - samples

Project description:Whole genome sequencing of normal sample for triple negative breast cancer patient SA676

| EGAD00001009376 | EGA

SHAH_H000653_N01_01_WG01_DATASET - samples

Project description:Whole genome sequencing of normal sample for triple negative breast cancer patient SA288

| EGAD00001009601 | EGA

SHAH_H000604_N01_01_WG01_DATASET - samples

Project description:Whole genome sequencing of normal sample for triple negative breast cancer patient SA681

| EGAD00001009381 | EGA

SHAH_H000667_N01_01_WG01_DATASET - samples

Project description:Whole genome sequencing of normal sample for triple negative breast cancer patient SA1073

| EGAD00001009594 | EGA

SHAH_H000664_N01_01_WG01_DATASET - samples

Project description:Whole genome sequencing of normal sample for triple negative breast cancer patient SA1064

| EGAD00001009591 | EGA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data