Genomics

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Targeting the DNA Repair Pathway in Ewing Sarcoma


ABSTRACT: Ewing’s Sarcoma is a bone and soft tissue tumor that primarily affects adolescents and young adults. With current therapies, 70% of patients with localized disease survive but survival for metastatic and recurrent disease is poor. Whole genome sequencing of 19 Ewing’s Sarcoma tumors showed that STAG2 was mutated in 10% (2/19) of the tumors and STAG2 protein was absent in 14% (13/106) tumors by immunohistochemical staining. Previous studies have shown that glioblastoma cells lacking STAG2 are more sensitive to poly-ADP ribose polymerase (PARP) inhibitors. We found that Ewing’s Sarcoma cell lines are sensitive to PARP inhibitors irrespective of STAG2 protein expression. Ewing Sarcoma cell lines are defective in double strand DNA break repair. PARP inhibitor cytotoxicity in Ewing’s Sarcoma cells was potentiated 10-1,000 fold by DNA damaging agents (irinotecan and temozolomide). To extend these studies in vivo, we developed an orthotopic Ewing’s Sarcoma mouse model and performed pharmacokinetic and pharmacodynamic studies with three different PARP inhibitors (BMN-673, olaparib and veliparib) in clinical development for pediatric cancer. Those data were used to design preclinical phase I studies to identify tolerable drug combinations for pilot efficacy testing (preclinical phase II). Based on the results of the preclinical phase I/II data, we performed a double blind, randomized, placebo controlled preclinical phase III trial with 274 mice in 15 treatment groups. Irinotecan administered in a low-dose protracted schedule optimized for pediatric patients was an effective DNA damaging agent to combine with olaparib and BMN-673 and was better tolerated than combinations with temozolomide. Combining olaparib or BMN-673 with irinotecan and temozolomide gave complete and durable responses in over 80% of the mice.

PROVIDER: EGAS00001000839 | EGA |

REPOSITORIES: EGA

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Publications

Genomic landscape of Ewing sarcoma defines an aggressive subtype with co-association of STAG2 and TP53 mutations.

Tirode Franck F   Surdez Didier D   Ma Xiaotu X   Parker Matthew M   Le Deley Marie Cécile MC   Bahrami Armita A   Zhang Zhaojie Z   Lapouble Eve E   Grossetête-Lalami Sandrine S   Rusch Michael M   Reynaud Stéphanie S   Rio-Frio Thomas T   Hedlund Erin E   Wu Gang G   Chen Xiang X   Pierron Gaelle G   Oberlin Odile O   Zaidi Sakina S   Lemmon Gordon G   Gupta Pankaj P   Vadodaria Bhavin B   Easton John J   Gut Marta M   Ding Li L   Mardis Elaine R ER   Wilson Richard K RK   Shurtleff Sheila S   Laurence Valérie V   Michon Jean J   Marec-Bérard Perrine P   Gut Ivo I   Downing James J   Dyer Michael M   Zhang Jinghui J   Delattre Olivier O  

Cancer discovery 20140915 11


<h4>Unlabelled</h4>Ewing sarcoma is a primary bone tumor initiated by EWSR1-ETS gene fusions. To identify secondary genetic lesions that contribute to tumor progression, we performed whole-genome sequencing of 112 Ewing sarcoma samples and matched germline DNA. Overall, Ewing sarcoma tumors had relatively few single-nucleotide variants, indels, structural variants, and copy-number alterations. Apart from whole chromosome arm copy-number changes, the most common somatic mutations were detected in  ...[more]

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