Genomics

Dataset Information

0

The HLA-DQβ1 insertion is a strong achalasia risk factor and displays a geospatial north-south gradient among Europeans


ABSTRACT: Idiopathic achalasia is a severe motility disorder of the esophagus and is characterized by a failure of the lower esophageal sphincter to relax due to a loss of neurons in the myenteric plexus. Most recently, we identified an 8 amino acid insertion in the cytoplasmic tail of HLA-DQβ1 as strong achalasia risk factor in a sample set from Central Europe, Italy, and Spain. Here, we tested whether the HLA-DQβ1 insertion also confers achalasia risk in the Polish and Swedish population. We could replicate the initial findings and the insertion shows strong achalasia association in both samples (Poland P = 1.84×10-04, Sweden P = 7.44×10-05). Combining all five European data sets – Central Europe, Italy, Spain, Poland, and Sweden – the insertion is achalasia associated with Pcombined = 1.67×10-35. In addition, we observe that the frequency of the insertion shows a geospatial north-south gradient. The insertion is less common in northern (around 6-7% in patients and 2% in controls from Sweden and Poland) compared to southern Europeans (around 16% in patients and 8% in controls from Italy) and shows a stronger attributable risk (AR) in the southern European population. Our study provides evidence that the prevalence of achalasia may differ between populations.

PROVIDER: EGAS00001001515 | EGA |

REPOSITORIES: EGA

Similar Datasets

2015-12-30 | GSE67332 | GEO
2014-08-22 | GSE59032 | GEO
2018-07-30 | GSE106284 | GEO
2020-07-14 | GSE154349 | GEO
2020-11-19 | GSE161719 | GEO
2014-08-22 | E-GEOD-59032 | biostudies-arrayexpress
2021-11-20 | GSE189122 | GEO
2022-04-15 | E-MTAB-3957 | biostudies-arrayexpress
2022-11-16 | GSE212713 | GEO
2014-06-01 | GSE55925 | GEO