Genomics

Dataset Information

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Ovarian cancer organoid biobank


ABSTRACT: Ovarian cancer (OC) is a heterogeneous disease usually diagnosed at a late stage. Experimental in vitro models that faithfully capture the hallmarks and tumor heterogeneity of OC are limited and hard to establish. We present a novel protocol that enables efficient derivation and long-term expansion of OC organoids. Utilizing this protocol, we have established 56 organoid lines from 32 patients, representing the spectrum of ovarian neoplasms, including non-malignant borderline tumors, as well as mucinous, clear-cell, endometrioid, low- and high-grade serous carcinomas. OC organoids recapitulate histological and genomic features of the pertinent lesion from which they were derived, illustrating intra- and inter-patient heterogeneity, and can be genetically modified. We show that OC organoids can be used for drug screening assays and capture different tumor subtype responses to the gold standard platinum-based chemotherapy, including acquisition of chemoresistance in recurrent disease. Finally, OC organoids can be xenografted, enabling in vivo drug sensitivity assays. Taken together, this demonstrates their potential application for research and personalized medicine.

PROVIDER: EGAS00001003073 | EGA |

REPOSITORIES: EGA

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Publications

An organoid platform for ovarian cancer captures intra- and interpatient heterogeneity.

Kopper Oded O   de Witte Chris J CJ   Lõhmussaar Kadi K   Valle-Inclan Jose Espejo JE   Hami Nizar N   Kester Lennart L   Balgobind Anjali Vanita AV   Korving Jeroen J   Proost Natalie N   Begthel Harry H   van Wijk Lise M LM   Revilla Sonia Aristín SA   Theeuwsen Rebecca R   van de Ven Marieke M   van Roosmalen Markus J MJ   Ponsioen Bas B   Ho Victor W H VWH   Neel Benjamin G BG   Bosse Tjalling T   Gaarenstroom Katja N KN   Vrieling Harry H   Vreeswijk Maaike P G MPG   van Diest Paul J PJ   Witteveen Petronella O PO   Jonges Trudy T   Bos Johannes L JL   van Oudenaarden Alexander A   Zweemer Ronald P RP   Snippert Hugo J G HJG   Kloosterman Wigard P WP   Clevers Hans H  

Nature medicine 20190422 5


Ovarian cancer (OC) is a heterogeneous disease usually diagnosed at a late stage. Experimental in vitro models that faithfully capture the hallmarks and tumor heterogeneity of OC are limited and hard to establish. We present a protocol that enables efficient derivation and long-term expansion of OC organoids. Utilizing this protocol, we have established 56 organoid lines from 32 patients, representing all main subtypes of OC. OC organoids recapitulate histological and genomic features of the per  ...[more]

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