Genomics

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Analysis of translatome, truncating mutations, lncRNA, circRNA and microproteins of 80 human DCM cases and controls


ABSTRACT: The regulation of gene expression in healthy and diseased human tissues is incompletely understood and has primarily been studied on the transcriptional level. Here, we quantify the impact of translation on gene expression and annotate novel translational events in 80 human hearts. These include 65 tissues from patients with dilated cardiomyopathy (DCM) - the most common cause of heart transplantation – and 15 unaffected controls. We show that translational regulation modulates disease-associated molecular processes. Further, we evaluate ribosome dynamics at protein truncating variants revealing incomplete termination of translation at titin-truncating variants (TTNtv) that commonly cause DCM. Finally, we identify dozens of unknown microproteins translated from lncRNAs and circRNAs and link these to mitochondrial processes. Several microproteins are expressed from lncRNAs with previously demonstrated function, suggesting a dual coding and noncoding role. This resource will stimulate novel functional investigations into cardiac biology in health and disease and may serve as a blueprint for characterizing the translational landscape of other human tissues.

OTHER RELATED OMICS DATASETS IN: PXD012593

PROVIDER: EGAS00001003263 | EGA |

REPOSITORIES: EGA

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Publications

The Translational Landscape of the Human Heart.

van Heesch Sebastiaan S   Witte Franziska F   Schneider-Lunitz Valentin V   Schulz Jana F JF   Adami Eleonora E   Faber Allison B AB   Kirchner Marieluise M   Maatz Henrike H   Blachut Susanne S   Sandmann Clara-Louisa CL   Kanda Masatoshi M   Worth Catherine L CL   Schafer Sebastian S   Calviello Lorenzo L   Merriott Rhys R   Patone Giannino G   Hummel Oliver O   Wyler Emanuel E   Obermayer Benedikt B   Mücke Michael B MB   Lindberg Eric L EL   Trnka Franziska F   Memczak Sebastian S   Schilling Marcel M   Felkin Leanne E LE   Barton Paul J R PJR   Quaife Nicholas M NM   Vanezis Konstantinos K   Diecke Sebastian S   Mukai Masaya M   Mah Nancy N   Oh Su-Jun SJ   Kurtz Andreas A   Schramm Christoph C   Schwinge Dorothee D   Sebode Marcial M   Harakalova Magdalena M   Asselbergs Folkert W FW   Vink Aryan A   de Weger Roel A RA   Viswanathan Sivakumar S   Widjaja Anissa A AA   Gärtner-Rommel Anna A   Milting Hendrik H   Dos Remedios Cris C   Knosalla Christoph C   Mertins Philipp P   Landthaler Markus M   Vingron Martin M   Linke Wolfgang A WA   Seidman Jonathan G JG   Seidman Christine E CE   Rajewsky Nikolaus N   Ohler Uwe U   Cook Stuart A SA   Hubner Norbert N  

Cell 20190530 1


Gene expression in human tissue has primarily been studied on the transcriptional level, largely neglecting translational regulation. Here, we analyze the translatomes of 80 human hearts to identify new translation events and quantify the effect of translational regulation. We show extensive translational control of cardiac gene expression, which is orchestrated in a process-specific manner. Translation downstream of predicted disease-causing protein-truncating variants appears to be frequent, s  ...[more]

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