Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Genome-wide characterization of Arabian Peninsula populations

ABSTRACT: The screening of 741,000 variants in 420 individuals from Arabian Peninsula (100 from Saudi Arabia, 100 from Yemen, 100 from Oman and 120 from UAE) and 80 individuals from Iran.

PROVIDER: EGAS00001003335 | EGA |

REPOSITORIES: EGA

ACCESS DATA

Json Xml

Similar Datasets

Characterization of Arabian Peninsula whole exomes

Project description:We conducted whole exome sequencing (using the SureSelect Human All Exon V5 + UTRs target enrichment kit) of 90 individuals from AP (23 from Saudi Arabia, 24 from Yemen, 24 from Oman and 19 from UAE).

| EGAS00001006487 | EGA

d2a1261f-e668-4b15-a615-5a0c88ed78d6 - samples

| EGAD00001009162 | EGA

Transcriptomic analysis of breast cancer

2014-04-15 | GSE36295 | GEO

Project description:Arabian Peninsula ARMS

| PRJNA1063439 | ENA

Transcriptomic analysis of breast cancer

Project description:Transcriptomic analysis of fresh breast cancer tissue versus normal tissues. The Study comprising 45 Saudi-Arabian subjects was designed to take advantage of transcriptomics to prospectively explore the roles of lifestyle and genetic susceptibility in the occurrence of breast cancer. Total RNA isolated from 45 surgically resected breast cancer tissues and 8 healthy breast tissues (3 from Affymetrix) and purified, labeled, and hybridized to Affymetrix Human Gene 1.0 ST Array.

2014-04-15 | E-GEOD-36295 | biostudies-arrayexpress

Carbapenemase producing Klebsiella pneumoniae ST14 of the Arabian Peninsula

Project description:Comparison of carbapenemase producing Klebsiella pneumoniae ST14 isolated in the Arabian Peninsula

| PRJEB44852 | ENA

Halomonas socia strain:Korea peninsula | isolate:Korea peninsula

Project description:Halomonas socia strain:Korea peninsula | isolate:Korea peninsula Genome sequencing

| PRJNA606118 | ENA

Protein expression plasticity contributes to heat and drought tolerance of date palm

Project description:Climate change is increasing the frequency and intensity of warming and drought periods around the globe, currently representing a threat to many plant species. Understanding the resistance and resilience of plants to climate change is, therefore, urgently needed. As date palm (Phoenix dactylifera) evolved adaptation mechanisms to a xeric environment and is able to tolerate large diurnal and seasonal temperature fluctuations, we studied the protein expression changes in their leaves, volatile organic compound emissions, and photosynthesis in response to variable growth temperatures and soil water deprivation. Plants were grown under controlled environmental conditions under simulated Saudi Arabian summer and winter climates followed by drought stress. We show that date palm is able to counteract the harsh conditions of the Arabian Peninsula by adjusting the abundances of proteins related to the photosynthetic machinery, abiotic stress and secondary metabolism. Under summer climate and water deprivation, these adjustments included efficient protein expression response mediated by heat shock proteins and the antioxidant system to counteract reactive oxygen species formation. Proteins related to secondary metabolism were downregulated, except for the P. dactylifera isoprene synthase (PdIspS), which was strongly upregulated in response to summer climate and drought. This study reports for the first time, the identification and functional characterization of the gene encoding for PdIspS, allowing future analysis of isoprene functions in date palm under extreme environments. Overall, the current results show that protein reprogramming of date palm leaves contribute to heat and drought tolerance. We conclude that the protein plasticity of date palm is one important mechanism of molecular adaptation to remarkable environmental fluctuations.

2022-02-16 | PXD021666 | Pride

Project description:Honeybee Conservation Project (Saudi Arabia)

| PRJNA667587 | ENA

Peninsula Iberica deep aquifers

Project description:Peninsula Iberica deep aquifers Metagenome

| PRJNA1087378 | ENA